Non-Coding RNA Search

Ss1.1-Pig3-SRG8005D21.5

Sequence:


               
               CTTCTGTGCCTGCACAGGTCTTCCCTGAAGGCCTATGGGAACGGCTGCTCCAGCAACAGC
AACGGTAGGACTGACTACACAGGGGAACAGAGTGGCTGTTACCTGGGGGAGGAGAAAGAC
AGCGAACGGCTGTGTGAGGAGCCCCCAGGCCCGGAAGGCTGTGCACACCGGCAAGGTACT
GTGCCCGATGATAGCACTGATTCACAGGGGAGGAACTGTAGTACAAATGACTCCATGCTG
TGATGCAGGTGTCTACTTTCTAAGCGCCCCTTTCCCTCCCAGCCAAACACTAAACAACTC
GAGTGTGATGAATTTAGAATGAACGTCTATAGAGATGTGCAGGAGGAGGAACATCCTTCT
GCCTTTTTATTTTTTATTTTTTTAAGTTGTAAAAAAGAGAAAACATTATTTGAGTGATTG
TTTCTTGTACAGTTCAGTTCCTCTTTGCATGGAACTTGTGTAAGTTTATGTCTGCAGGCC
TTCGGTCCCAGAGGACGTGGGGCTGGTATGTTTTGATGACTTTTCCGCATATCTACCTCA
TTGATCAAGTATTAGGGGTAATATATTGCTGCTGGCAATTTGTTTCTGAAGGAGACCTTC
CTTCCTGCACCCTTGGACTGGAGGATCTTGAGTCTCTCGGACCTTTCAGCTGTGAACATG
GACTCTCTCCACCCCTCTTATTTGCTCAAACGGGGTGTTGTAGGCAGGGATTTGAGGGGC
AGCTTTGGTTGTTTTCCTGAGCAAAGTCTAAAGTTTACAGTAAATAAATTGTTTGACCAT
GAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGTGCCTGCACAGGTCTTCCCTGAAGGCCTATGGGAACGGCTGCTCCAGCAACAGC
AACGGTAGGACTGACTACACAGGGGAACAGAGTGGCTGTTACCTGGGGGAGGAGAAAGAC
AGCGAACGGCTGTGTGAGGAGCCCCCAGGCCCGGAAGGCTGTGCACACCGGCAAGGTACT
GTGCCCGATGATAGCACTGATTCACAGGGGAGGAACTGTAGTACAAATGACTCCATGCTG
TGATGCAGGTGTCTACTTTCTAAGCGCCCCTTTCCCTCCCAGCCAAACACTAAACAACTC
GAGTGTGATGAATTTAGAATGAACGTCTATAGAGATGTGCAGGAGGAGGAACATCCTTCT
GCCTTTTTATTTTTTATTTTTTTAAGTTGTAAAAAAGAGAAAACATTATTTGAGTGATTG
TTTCTTGTACAGTTCAGTTCCTCTTTGCATGGAACTTGTGTAAGTTTATGTCTGCAGGCC
TTCGGTCCCAGAGGACGTGGGGCTGGTATGTTTTGATGACTTTTCCGCATATCTACCTCA
TTGATCAAGTATTAGGGGTAATATATTGCTGCTGGCAATTTGTTTCTGAAGGAGACCTTC
CTTCCTGCACCCTTGGACTGGAGGATCTTGAGTCTCTCGGACCTTTCAGCTGTGAACATG
GACTCTCTCCACCCCTCTTATTTGCTCAAACGGGGTGTTGTAGGCAGGGATTTGAGGGGC
AGCTTTGGTTGTTTTCCTGAGCAAAGTCTAAAGTTTACAGTAAATAAATTGTTTGACCAT
GAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UCZ1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UCZ1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-437, + strand, RNAz p=0.999731

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-437, + strand, RNAz p=0.999731

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000024, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000024, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-782, gnl|bosTau2|chr7 (42689105-42688313)
               

               
               1-782, gnl|Hg17|chr5 (148187602-148188380)
               

               
               1-782, gnl|Mm7|chr18 (62568177-62567255)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-782, gnl|bosTau2|chr7 (42689105-42688313)
               

               
               1-782, gnl|Hg17|chr5 (148187602-148188380)
               

               
               1-782, gnl|Mm7|chr18 (62568177-62567255)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               ssp (0.13552)

	1-782, gnl\|bosTau2\|chr7 (42689105-42688313)
	1-782, gnl\|Hg17\|chr5 (148187602-148188380)
	1-782, gnl\|Mm7\|chr18 (62568177-62567255)