Ss1.1-Pig3-SRG8005E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCACGCGTCCGGAGAAACTCTTGATGTTTCGGTGAGTTTTAACGGAGGGAAGTCTGTC ATCTCAAGCTCACTAATTGTCACGGCCACAGAATGTTCTAATGGGATTGCAGCCGTCATC GCTATTTTGGTGTTACTGCTACTCCTGGGTATCGGTTTGATGTGGTGGTTTTGGCCCCTT TGCTGCAAAGTGGTTATCAAGGATCCTCCTCCACCACCACCTCCTGCACCAAAAGAGGAG GAAGAAGAACCTCTGCCTACCAAGAAATGGCCAACCGTGGATGCTTCCTATTATGGTGGC CGAGGGGTTGGAGGAATTAAAAGAATGGAGGTTCGTTGGGGTGATAAGGGATCTACTGAG GAAGGTGCAAGACTGGAGAAGGCCAAAAATGCTGTCGTGAAGATTCCTGAAGAACCAGAG GAACCCGTCAGGCCTAGACCACCTCGCGCCAAACCCACACACCAGCCTCCTCAGACAAAG TGGTACACGCCAATTAAGGGTCGGCTGGACGCGCTCTGGGCTTTGCTGAGGAGGCAGTAC GACCGGGTGTCCTTGATGCGGCCTCAGGAAGGAGACGAGGGCCGCTGCATAAACTTCTCC CGGGTTCCTTCCCAATAAAGCGAATCTGGAAGACCAAGAGGTATGAAGAAGGTCCATCTA CAAGGCCGGTTTCCATCCAGATGAAAACCAGCGCATTTAGAAGTTGTTGGAAGAGCAGCT CTGTTCCTCTCAGTCAGGAAATGTTTCCTCTGCCTTCTTCTGCTTTGCTTTACACCAGAC CTTTTCAAACACTTGTTCTGCCATCTACATGGGCGTTGATGAAACCCAGGGGCACCGCCT GATTCAGGACACTGGCCACAAAGAGGAGCACGGTTAACTCCATGCCGTGGTTTATGCAAG AGAGTCTGTCTGAATGTGTAGAAGAGGAGAAAGCAAAACCAGAAGCGTGTGGATGAGCTC AAAATAGGGACCGCGAAACGACGGCGACGGCGGGCCTGCCGAGGAGAACGGGGTGTACCA CGTGAAAACGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCACGCGTCCGGAGAAACTCTTGATGTTTCGGTGAGTTTTAACGGAGGGAAGTCTGTC ATCTCAAGCTCACTAATTGTCACGGCCACAGAATGTTCTAATGGGATTGCAGCCGTCATC GCTATTTTGGTGTTACTGCTACTCCTGGGTATCGGTTTGATGTGGTGGTTTTGGCCCCTT TGCTGCAAAGTGGTTATCAAGGATCCTCCTCCACCACCACCTCCTGCACCAAAAGAGGAG GAAGAAGAACCTCTGCCTACCAAGAAATGGCCAACCGTGGATGCTTCCTATTATGGTGGC CGAGGGGTTGGAGGAATTAAAAGAATGGAGGTTCGTTGGGGTGATAAGGGATCTACTGAG GAAGGTGCAAGACTGGAGAAGGCCAAAAATGCTGTCGTGAAGATTCCTGAAGAACCAGAG GAACCCGTCAGGCCTAGACCACCTCGCGCCAAACCCACACACCAGCCTCCTCAGACAAAG TGGTACACGCCAATTAAGGGTCGGCTGGACGCGCTCTGGGCTTTGCTGAGGAGGCAGTAC GACCGGGTGTCCTTGATGCGGCCTCAGGAAGGAGACGAGGGCCGCTGCATAAACTTCTCC CGGGTTCCTTCCCAATAAAGCGAATCTGGAAGACCAAGAGGTATGAAGAAGGTCCATCTA CAAGGCCGGTTTCCATCCAGATGAAAACCAGCGCATTTAGAAGTTGTTGGAAGAGCAGCT CTGTTCCTCTCAGTCAGGAAATGTTTCCTCTGCCTTCTTCTGCTTTGCTTTACACCAGAC CTTTTCAAACACTTGTTCTGCCATCTACATGGGCGTTGATGAAACCCAGGGGCACCGCCT GATTCAGGACACTGGCCACAAAGAGGAGCACGGTTAACTCCATGCCGTGGTTTATGCAAG AGAGTCTGTCTGAATGTGTAGAAGAGGAGAAAGCAAAACCAGAAGCGTGTGGATGAGCTC AAAATAGGGACCGCGAAACGACGGCGACGGCGGGCCTGCCGAGGAGAACGGGGTGTACCA CGTGAAAACGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 358-456, + strand, RNAz p=0.606217 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 358-456, + strand, RNAz p=0.606217 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 97-201, gnl|bosTau2|chr6 (52608300-52608196) | |
| 97-201, gnl|Hg17|chr4 (81286949-81286845) | |
| 97-201, gnl|Mm7|chr5 (97174317-97174217) | |
| 329-499, gnl|bosTau2|chr6 (52584390-52584220) | |
| 329-499, gnl|canFam2|chr32 (7168897-7169105) | |
| 329-499, gnl|danRer3|chr5 (34966020-34966223) | |
| 329-499, gnl|dasNov1|scaffold_3206 (129642-129850) | |
| 329-499, gnl|echTel1|scaffold_295926 (322-530) | |
| 329-499, gnl|fr1|chrUn (72726052-72725862) | |
| 329-499, gnl|galGal2|chr4 (45826800-45826979) | |
| 329-499, gnl|hg17|chr4 (81256330-81256538) | |
| 329-499, gnl|Hg17|chr4 (81256509-81256339) | |
| 329-499, gnl|loxAfr1|scaffold_2255 (124798-124595) | |
| 329-499, gnl|mm7|chr5 (97151744-97151947) | |
| 329-499, gnl|Mm7|chr5 (97151920-97151753) | |
| 329-499, gnl|monDom2|scaffold_37 (20595111-20594931) | |
| 329-499, gnl|oryCun1|scaffold_165836 (3373-3559) | |
| 329-499, gnl|panTro1|chr3 (52474913-52474705) | |
| 329-499, gnl|rheMac2|chr5 (49611538-49611330) | |
| 329-499, gnl|rn3|chr14 (13051666-13051463) | |
| 329-499, gnl|tetNig1|chr12 (9774041-9773845) | |
| 329-499, gnl|xenTro1|scaffold_267 (57124-57310) | |
| 662-970, gnl|bosTau2|chr6 (52508993-52508692) | |
| 662-970, gnl|Hg17|chr4 (81185711-81185404) | |
| 662-970, gnl|Mm7|chr5 (97099856-97099552) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-201, gnl|bosTau2|chr6 (52608300-52608196) | |
| 97-201, gnl|Hg17|chr4 (81286949-81286845) | |
| 97-201, gnl|Mm7|chr5 (97174317-97174217) | |
| 329-499, gnl|bosTau2|chr6 (52584390-52584220) | |
| 329-499, gnl|canFam2|chr32 (7168897-7169105) | |
| 329-499, gnl|danRer3|chr5 (34966020-34966223) | |
| 329-499, gnl|dasNov1|scaffold_3206 (129642-129850) | |
| 329-499, gnl|echTel1|scaffold_295926 (322-530) | |
| 329-499, gnl|fr1|chrUn (72726052-72725862) | |
| 329-499, gnl|galGal2|chr4 (45826800-45826979) | |
| 329-499, gnl|hg17|chr4 (81256330-81256538) | |
| 329-499, gnl|Hg17|chr4 (81256509-81256339) | |
| 329-499, gnl|loxAfr1|scaffold_2255 (124798-124595) | |
| 329-499, gnl|mm7|chr5 (97151744-97151947) | |
| 329-499, gnl|Mm7|chr5 (97151920-97151753) | |
| 329-499, gnl|monDom2|scaffold_37 (20595111-20594931) | |
| 329-499, gnl|oryCun1|scaffold_165836 (3373-3559) | |
| 329-499, gnl|panTro1|chr3 (52474913-52474705) | |
| 329-499, gnl|rheMac2|chr5 (49611538-49611330) | |
| 329-499, gnl|rn3|chr14 (13051666-13051463) | |
| 329-499, gnl|tetNig1|chr12 (9774041-9773845) | |
| 329-499, gnl|xenTro1|scaffold_267 (57124-57310) | |
| 662-970, gnl|bosTau2|chr6 (52508993-52508692) | |
| 662-970, gnl|Hg17|chr4 (81185711-81185404) | |
| 662-970, gnl|Mm7|chr5 (97099856-97099552) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |