Ss1.1-Pig3-SRG8005G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGGCGGTGGAGGAGAGGGGCTTTCCAAAATGCTAGGGAATTCCGGAGCTGGCGGCTG GCCGGGGAGCTGGGAGCAGGTTTGGGGATCCCTGCCTGTCCGCCCGGGGAGCAGTGAACC CCAACTACACCGGCGGGGAGCCCAAGCGGTCCCGGACGGCCTACACCCGGCAGCAAGTCC TAGAACTGGAAAAGGAATTTCATTTTAACAGGTATCTGACGCGGCGCCGTCGGATTGAAA TCGCTCACACCCTCTGTCTGTCCGAGCGCCAGATCAAGATCTGGTTCCAGAACCGGAGGA TGAAGTGGAAAAAAGACCACAAGCTGCCCAACACCAAAGGCAGGTCCTCATCCTCGTCCT CGTCCTCCTCCTCCTGCTCCTCCTCAGCTGCCCCCGGCCAACATTTGCAGCCTCTGGCCA AGGACCACCACACGGACCTGACGACCTTATAGAAGTGGGGACCCTGGGCCCATCCCTCCC TGCGCTCCCGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGGCCTGCTGTCACCTCCTTGGG CTCTAAGGTACTGTGGGGTGGACCTGGGACACGCAGGCCGCCCTCGGACTAGGTTAGAAT CCTGCCCGAGGGCAGCCCCCTCCCTGGAGCGGGGATGGGGGTGGGAGGGGGGCGGGATTC TCTCTCTAAGTATATTCTCAAATGGCAGGAGCTACTGAAAACAGAAAACCTTGGCGAGTC ATTAAACTCCTGAAAATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGGCGGTGGAGGAGAGGGGCTTTCCAAAATGCTAGGGAATTCCGGAGCTGGCGGCTG GCCGGGGAGCTGGGAGCAGGTTTGGGGATCCCTGCCTGTCCGCCCGGGGAGCAGTGAACC CCAACTACACCGGCGGGGAGCCCAAGCGGTCCCGGACGGCCTACACCCGGCAGCAAGTCC TAGAACTGGAAAAGGAATTTCATTTTAACAGGTATCTGACGCGGCGCCGTCGGATTGAAA TCGCTCACACCCTCTGTCTGTCCGAGCGCCAGATCAAGATCTGGTTCCAGAACCGGAGGA TGAAGTGGAAAAAAGACCACAAGCTGCCCAACACCAAAGGCAGGTCCTCATCCTCGTCCT CGTCCTCCTCCTCCTGCTCCTCCTCAGCTGCCCCCGGCCAACATTTGCAGCCTCTGGCCA AGGACCACCACACGGACCTGACGACCTTATAGAAGTGGGGACCCTGGGCCCATCCCTCCC TGCGCTCCCGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGGCCTGCTGTCACCTCCTTGGG CTCTAAGGTACTGTGGGGTGGACCTGGGACACGCAGGCCGCCCTCGGACTAGGTTAGAAT CCTGCCCGAGGGCAGCCCCCTCCCTGGAGCGGGGATGGGGGTGGGAGGGGGGCGGGATTC TCTCTCTAAGTATATTCTCAAATGGCAGGAGCTACTGAAAACAGAAAACCTTGGCGAGTC ATTAAACTCCTGAAAATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 191-337, - strand, RNAz p=0.946603 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 191-337, - strand, RNAz p=0.946603 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 112-337, gnl|bosTau2|chr19 (31195920-31195695) | |
| 112-337, gnl|canFam2|chr9 (28165672-28165940) | |
| 112-337, gnl|danRer3|chr3 (18041328-18041562) | |
| 112-337, gnl|dasNov1|scaffold_2089 (115252-115520) | |
| 112-337, gnl|echTel1|scaffold_307183 (14607-14875) | |
| 112-337, gnl|fr1|chrUn (164032559-164032306) | |
| 112-337, gnl|galGal2|chr2 (31787528-31787827) | |
| 112-337, gnl|hg17|chr17 (44009148-44009416) | |
| 112-337, gnl|Hg17|chr17 (44009384-44009159) | |
| 112-337, gnl|loxAfr1|scaffold_8696 (10100-10368) | |
| 112-337, gnl|mm7|chr11 (96429304-96429034) | |
| 112-337, gnl|Mm7|chr11 (96429066-96429291) | |
| 112-337, gnl|monDom2|scaffold_18 (45624663-45624399) | |
| 112-337, gnl|oryCun1|scaffold_209077 (1339-1071) | |
| 112-337, gnl|panTro1|chr19_random (42958103-42958371) | |
| 112-337, gnl|rheMac2|chr16 (32806540-32806808) | |
| 112-337, gnl|rn3|chr10 (85066778-85066510) | |
| 112-337, gnl|tetNig1|chrUn_random (38083034-38083292) | |
| 112-337, gnl|xenTro1|scaffold_329 (543133-543386) | |
| 137-316, gnl|bosTau2|chr12 (17151890-17152069) | |
| 137-316, gnl|canFam2|chr25 (14730367-14730183) | |
| 137-316, gnl|danRer3|chr24 (18852039-18852204) | |
| 137-316, gnl|dasNov1|scaffold_4770 (27865-27694) | |
| 137-316, gnl|echTel1|scaffold_218061 (8013-7833) | |
| 137-316, gnl|fr1|chrUn (57904260-57904095) | |
| 137-316, gnl|galGal2|chrUn (97586324-97586139) | |
| 137-316, gnl|hg17|chr13 (27396453-27396637) | |
| 137-316, gnl|Hg17|chr13 (27396418-27396597) | |
| 137-316, gnl|loxAfr1|scaffold_24587 (1080-1260) | |
| 137-316, gnl|mm7|chr5 (146168844-146169028) | |
| 137-316, gnl|Mm7|chr5 (146168809-146168988) | |
| 137-316, gnl|monDom2|scaffold_15 (37112218-37112402) | |
| 137-316, gnl|oryCun1|scaffold_206235 (92023-91839) | |
| 137-316, gnl|panTro1|chr14 (26578133-26578317) | |
| 137-316, gnl|rheMac2|chr17 (7585963-7586147) | |
| 137-316, gnl|rn3|chr6 (76921856-76921663) | |
| 137-316, gnl|tetNig1|chr6 (2711191-2711026) | |
| 137-316, gnl|xenTro1|scaffold_449 (633919-634092) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 112-337, gnl|bosTau2|chr19 (31195920-31195695) | |
| 112-337, gnl|canFam2|chr9 (28165672-28165940) | |
| 112-337, gnl|danRer3|chr3 (18041328-18041562) | |
| 112-337, gnl|dasNov1|scaffold_2089 (115252-115520) | |
| 112-337, gnl|echTel1|scaffold_307183 (14607-14875) | |
| 112-337, gnl|fr1|chrUn (164032559-164032306) | |
| 112-337, gnl|galGal2|chr2 (31787528-31787827) | |
| 112-337, gnl|hg17|chr17 (44009148-44009416) | |
| 112-337, gnl|Hg17|chr17 (44009384-44009159) | |
| 112-337, gnl|loxAfr1|scaffold_8696 (10100-10368) | |
| 112-337, gnl|mm7|chr11 (96429304-96429034) | |
| 112-337, gnl|Mm7|chr11 (96429066-96429291) | |
| 112-337, gnl|monDom2|scaffold_18 (45624663-45624399) | |
| 112-337, gnl|oryCun1|scaffold_209077 (1339-1071) | |
| 112-337, gnl|panTro1|chr19_random (42958103-42958371) | |
| 112-337, gnl|rheMac2|chr16 (32806540-32806808) | |
| 112-337, gnl|rn3|chr10 (85066778-85066510) | |
| 112-337, gnl|tetNig1|chrUn_random (38083034-38083292) | |
| 112-337, gnl|xenTro1|scaffold_329 (543133-543386) | |
| 137-316, gnl|bosTau2|chr12 (17151890-17152069) | |
| 137-316, gnl|canFam2|chr25 (14730367-14730183) | |
| 137-316, gnl|danRer3|chr24 (18852039-18852204) | |
| 137-316, gnl|dasNov1|scaffold_4770 (27865-27694) | |
| 137-316, gnl|echTel1|scaffold_218061 (8013-7833) | |
| 137-316, gnl|fr1|chrUn (57904260-57904095) | |
| 137-316, gnl|galGal2|chrUn (97586324-97586139) | |
| 137-316, gnl|hg17|chr13 (27396453-27396637) | |
| 137-316, gnl|Hg17|chr13 (27396418-27396597) | |
| 137-316, gnl|loxAfr1|scaffold_24587 (1080-1260) | |
| 137-316, gnl|mm7|chr5 (146168844-146169028) | |
| 137-316, gnl|Mm7|chr5 (146168809-146168988) | |
| 137-316, gnl|monDom2|scaffold_15 (37112218-37112402) | |
| 137-316, gnl|oryCun1|scaffold_206235 (92023-91839) | |
| 137-316, gnl|panTro1|chr14 (26578133-26578317) | |
| 137-316, gnl|rheMac2|chr17 (7585963-7586147) | |
| 137-316, gnl|rn3|chr6 (76921856-76921663) | |
| 137-316, gnl|tetNig1|chr6 (2711191-2711026) | |
| 137-316, gnl|xenTro1|scaffold_449 (633919-634092) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| cki (0.165235) | |
| eru (0.120048) |