Non-Coding RNA Search

Ss1.1-Pig3-SRG8005I21.5

Sequence:


               
               ATCCCAAGCCGTCATCTCCCTGGAGCAGCACAGCGCCCCGCTCAGTCCGGGGGTGGGGGA
CGCAGGACTCGCGGCTTGCCTCGGGCTCTACCTGGAGTGATGGTGGTTCAGTGCGTCCTA
GTTACTGGCTGGTTCTTCACAATCTCACTCCACAGATTGATGGGTCAACCTTGAGAACCA
TCTGCATGCAGCATGGCCCACTGCTGACATTCCATCTGAACCTAACCCAGGGCACTGCCC
TGATCCGATACAGCACCAAACAGGAGGCGGCCAAGGCCCAAACTGCACTGCACATGTGTG
TGTTGGGAAACACTACCATCCTGGCTGAGTTTGCCACCGACGACGAAGTTAGCCGCTTTC
TGGCACAAGCTCAGCCCCCTACGCCCGCGGCAACCCCAAGCGCGCCCGCAGCAGGTTGGC
AGTCCCTGGAGACCAGCCAGACCCAGTCAGATCCCGTCGGACCTGCTCTGAATCTTTTTG
GTGGGTCCACAGGGCTCGGGCAGTGGAGCAGCAGCGCTGGTGGCGGCAGCGGGGCCGACC
TTGCCGGCGCTTCGTTGTGGGGGCCCCCAAACTATTCTTCTAGCTTGTGGGGAGTCCCAA
CCGTGGAAGATCCCCATAGGATGGGCAGCCCTGCTCCTTTACTACCTGGTGACCTTCTGG
GAGGAGGGTCGGATTCAATCTGAACTTAGAACTTTCAACTCTGACCTCGTGACCTTTTTT
GGAACAGCAGCAGCACTAACTTGACCTTTTCGTTTTTTTTTTCAACTTGCAATAAATACA
TTTTTAAAAGGAAAAAAGAAAACGGAGAGAGAAAAAAAGGTGGGTCATTGACAGACTGTC
TGAGCACATAGTTGCCTCCCTTATAACTTCAGTTTTTTCGTTTGGAATATGAATCCAAAA
AGAGAACATATCACTCTTGAAATACTTGAATCATGAACGCCAACCTAGAAAGACAATGTG
AAGCAAGTACACATACCATTTAAATTTAAACACAAAAAAATTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCCAAGCCGTCATCTCCCTGGAGCAGCACAGCGCCCCGCTCAGTCCGGGGGTGGGGGA
CGCAGGACTCGCGGCTTGCCTCGGGCTCTACCTGGAGTGATGGTGGTTCAGTGCGTCCTA
GTTACTGGCTGGTTCTTCACAATCTCACTCCACAGATTGATGGGTCAACCTTGAGAACCA
TCTGCATGCAGCATGGCCCACTGCTGACATTCCATCTGAACCTAACCCAGGGCACTGCCC
TGATCCGATACAGCACCAAACAGGAGGCGGCCAAGGCCCAAACTGCACTGCACATGTGTG
TGTTGGGAAACACTACCATCCTGGCTGAGTTTGCCACCGACGACGAAGTTAGCCGCTTTC
TGGCACAAGCTCAGCCCCCTACGCCCGCGGCAACCCCAAGCGCGCCCGCAGCAGGTTGGC
AGTCCCTGGAGACCAGCCAGACCCAGTCAGATCCCGTCGGACCTGCTCTGAATCTTTTTG
GTGGGTCCACAGGGCTCGGGCAGTGGAGCAGCAGCGCTGGTGGCGGCAGCGGGGCCGACC
TTGCCGGCGCTTCGTTGTGGGGGCCCCCAAACTATTCTTCTAGCTTGTGGGGAGTCCCAA
CCGTGGAAGATCCCCATAGGATGGGCAGCCCTGCTCCTTTACTACCTGGTGACCTTCTGG
GAGGAGGGTCGGATTCAATCTGAACTTAGAACTTTCAACTCTGACCTCGTGACCTTTTTT
GGAACAGCAGCAGCACTAACTTGACCTTTTCGTTTTTTTTTTCAACTTGCAATAAATACA
TTTTTAAAAGGAAAAAAGAAAACGGAGAGAGAAAAAAAGGTGGGTCATTGACAGACTGTC
TGAGCACATAGTTGCCTCCCTTATAACTTCAGTTTTTTCGTTTGGAATATGAATCCAAAA
AGAGAACATATCACTCTTGAAATACTTGAATCATGAACGCCAACCTAGAAAGACAATGTG
AAGCAAGTACACATACCATTTAAATTTAAACACAAAAAAATTAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8VD67_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8VD67_MOUSE

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               143-301, gnl|bosTau2|chr19 (47929630-47929471)
               

               
               143-301, gnl|canFam2|chr9 (6022111-6021923)
               

               
               143-301, gnl|danRer3|chr3 (31396877-31397057)
               

               
               143-301, gnl|dasNov1|scaffold_6631 (91321-91497)
               

               
               143-301, gnl|echTel1|scaffold_308769 (77506-77669)
               

               
               143-301, gnl|fr1|chrUn (86811858-86811698)
               

               
               143-301, gnl|galGal2|chr18 (3886974-3887150)
               

               
               143-301, gnl|hg17|chr17 (73611060-73611247)
               

               
               143-301, gnl|Hg17|chr17 (73611076-73611235)
               

               
               143-301, gnl|loxAfr1|scaffold_6441 (12209-12386)
               

               
               143-301, gnl|mm7|chr11 (117868642-117868825)
               

               
               143-301, gnl|Mm7|chr11 (117868658-117868814)
               

               
               143-301, gnl|monDom2|scaffold_18 (6857043-6857216)
               

               
               143-301, gnl|oryCun1|scaffold_201474 (72216-72385)
               

               
               143-301, gnl|panTro1|chr19 (77156232-77156419)
               

               
               143-301, gnl|rheMac2|chr16 (73395251-73395438)
               

               
               143-301, gnl|rn3|chr3 (138805345-138805203)
               

               
               143-301, gnl|tetNig1|chr3 (8616992-8616815)
               

               
               143-301, gnl|xenTro1|scaffold_135 (1478742-1478904)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-301, gnl|bosTau2|chr19 (47929630-47929471)
               

               
               143-301, gnl|canFam2|chr9 (6022111-6021923)
               

               
               143-301, gnl|danRer3|chr3 (31396877-31397057)
               

               
               143-301, gnl|dasNov1|scaffold_6631 (91321-91497)
               

               
               143-301, gnl|echTel1|scaffold_308769 (77506-77669)
               

               
               143-301, gnl|fr1|chrUn (86811858-86811698)
               

               
               143-301, gnl|galGal2|chr18 (3886974-3887150)
               

               
               143-301, gnl|hg17|chr17 (73611060-73611247)
               

               
               143-301, gnl|Hg17|chr17 (73611076-73611235)
               

               
               143-301, gnl|loxAfr1|scaffold_6441 (12209-12386)
               

               
               143-301, gnl|mm7|chr11 (117868642-117868825)
               

               
               143-301, gnl|Mm7|chr11 (117868658-117868814)
               

               
               143-301, gnl|monDom2|scaffold_18 (6857043-6857216)
               

               
               143-301, gnl|oryCun1|scaffold_201474 (72216-72385)
               

               
               143-301, gnl|panTro1|chr19 (77156232-77156419)
               

               
               143-301, gnl|rheMac2|chr16 (73395251-73395438)
               

               
               143-301, gnl|rn3|chr3 (138805345-138805203)
               

               
               143-301, gnl|tetNig1|chr3 (8616992-8616815)
               

               
               143-301, gnl|xenTro1|scaffold_135 (1478742-1478904)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

	143-301, gnl\|bosTau2\|chr19 (47929630-47929471)
	143-301, gnl\|canFam2\|chr9 (6022111-6021923)
	143-301, gnl\|danRer3\|chr3 (31396877-31397057)
	143-301, gnl\|dasNov1\|scaffold_6631 (91321-91497)
	143-301, gnl\|echTel1\|scaffold_308769 (77506-77669)
	143-301, gnl\|fr1\|chrUn (86811858-86811698)
	143-301, gnl\|galGal2\|chr18 (3886974-3887150)
	143-301, gnl\|hg17\|chr17 (73611060-73611247)
	143-301, gnl\|Hg17\|chr17 (73611076-73611235)
	143-301, gnl\|loxAfr1\|scaffold_6441 (12209-12386)
	143-301, gnl\|mm7\|chr11 (117868642-117868825)
	143-301, gnl\|Mm7\|chr11 (117868658-117868814)
	143-301, gnl\|monDom2\|scaffold_18 (6857043-6857216)
	143-301, gnl\|oryCun1\|scaffold_201474 (72216-72385)
	143-301, gnl\|panTro1\|chr19 (77156232-77156419)
	143-301, gnl\|rheMac2\|chr16 (73395251-73395438)
	143-301, gnl\|rn3\|chr3 (138805345-138805203)
	143-301, gnl\|tetNig1\|chr3 (8616992-8616815)
	143-301, gnl\|xenTro1\|scaffold_135 (1478742-1478904)