Non-Coding RNA Search

Ss1.1-Pig3-SRG8005L21.5

Sequence:


               
               TGATCGTGCAGGCGCGGCCAATCCGCCGGCGGACCAGCAAGTACTACATCCCTGAGGCTG
TATACGGCCTGCAGGCGTATCCGGCCTACGCAGGCGGCGGTGGCTTCGTGCTCTCTGGAG
CCACGCTACACCGCTTGGCCGGCGCCTGCGCGCAGGTTGAGCTCTTCCCCATCGACGATG
TCTTTCTGGGAATGTGTCTGCAGCGACTGCGTCTCACGCCTGAGCCTCACCCTGCTTTCC
GAACCTTTGGTATCCCTCGACCTTCAGCCGCCCCGCACCTACGCACCTTCGATCCCTGCT
TTTACCGCGAGCTGGTTGTAGTGCACGGGCTTTCGGCTGCTGACATCTGGCTTATGTGGC
ACTTGCTGCATGGGCCGCACGGGCCAGCCTGTGCACGTCCATGGCCTGTTGCTGCTGGCC
CCTTCCAGTGGGGCCCCTAGCACCTATCATATAGCTCCTCACTCCGCTCATTCAGACCCA
GTACGAAGTGGGAGGTAGTTTGAAGGGTAGGTTTCCCAGACCGTTTAGTGGTCTATGCGG
TTCTTCCCTAGAAAGGGCATCCAGGCGTCTGCCTCCACGATGTGCCAGGGAATGCATTTG
GTTCCTGCTGGCCCACCTTGCTGGAAGGTGACCTGGAACCAATCTAATGGTGGCTTTTGG
AGATAGCCAGGGCTGAGACGGCGGAACACCAGGCTCTTTGCCAAGCAGGTGAACGTTTGG
TCCTCCTACTAGGAATGTGTGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATCGTGCAGGCGCGGCCAATCCGCCGGCGGACCAGCAAGTACTACATCCCTGAGGCTG
TATACGGCCTGCAGGCGTATCCGGCCTACGCAGGCGGCGGTGGCTTCGTGCTCTCTGGAG
CCACGCTACACCGCTTGGCCGGCGCCTGCGCGCAGGTTGAGCTCTTCCCCATCGACGATG
TCTTTCTGGGAATGTGTCTGCAGCGACTGCGTCTCACGCCTGAGCCTCACCCTGCTTTCC
GAACCTTTGGTATCCCTCGACCTTCAGCCGCCCCGCACCTACGCACCTTCGATCCCTGCT
TTTACCGCGAGCTGGTTGTAGTGCACGGGCTTTCGGCTGCTGACATCTGGCTTATGTGGC
ACTTGCTGCATGGGCCGCACGGGCCAGCCTGTGCACGTCCATGGCCTGTTGCTGCTGGCC
CCTTCCAGTGGGGCCCCTAGCACCTATCATATAGCTCCTCACTCCGCTCATTCAGACCCA
GTACGAAGTGGGAGGTAGTTTGAAGGGTAGGTTTCCCAGACCGTTTAGTGGTCTATGCGG
TTCTTCCCTAGAAAGGGCATCCAGGCGTCTGCCTCCACGATGTGCCAGGGAATGCATTTG
GTTCCTGCTGGCCCACCTTGCTGGAAGGTGACCTGGAACCAATCTAATGGTGGCTTTTGG
AGATAGCCAGGGCTGAGACGGCGGAACACCAGGCTCTTTGCCAAGCAGGTGAACGTTTGG
TCCTCCTACTAGGAATGTGTGTAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-160, - strand, RNAz p=0.629295
               

               
               281-556, + strand, RNAz p=0.993729

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.629295
               

               
               281-556, + strand, RNAz p=0.993729

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of BC012191, +
               

               
               5' of BC012191, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC012191, +
               

               
               5' of BC012191, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-741, gnl|bosTau2|chr18 (28336620-28335868)
               

               
               1-741, gnl|Hg17|chr16 (65741120-65740391)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-741, gnl|bosTau2|chr18 (28336620-28335868)
               

               
               1-741, gnl|Hg17|chr16 (65741120-65740391)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nco (0.161734)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	41-160, - strand, RNAz p=0.629295
	281-556, + strand, RNAz p=0.993729

	1-741, gnl\|bosTau2\|chr18 (28336620-28335868)
	1-741, gnl\|Hg17\|chr16 (65741120-65740391)