Ss1.1-Pig3-SRG8005M03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCGGGAGACGTGGTGTCGCTGCGGGCTCGCTCTCCCGCTCGCTAGGCTTGGTGGGAA GGCCTGTTCTCGAGTCCGCGCTTTTCGTCGCCGCCATGTCGGGAGGTGGTGTGATCCGTG GCCCGGCAGGGAACAACGATTGCCGCATCTACGTGGGTAACTTACCTCCAGACATCCGAA CCAAGGACATTGAGGACGTGTTCTACAAATACGGTGCTATCCGCGACATCGACCTGAAGA ATCGCCGCGGAGGACCGCCCTTCGCCTTCGTTGAGTTCGAGGACCCGCGAGACGCAGAAG ACGCGGTGTATGGTCGCGACGGCTATGATTACGATGGATACCGTCTGCGGGTGGAGTTTC CTCGAAGCGGCCGTGGTACCGGCCGAGGCGGCGGCGGGGGTGGTGGCGGCGGGGCTCCCC GAGGGCGCTATGGCCCCCCATCCAGGCGTTCTGAAAACAGAGTGGTTGTCTCTGGACTGC CTCCAAGTGGAAGCTGGCAGGATTTGAAGGATCACATGCGTGAAGCAGGTGATGTATGTT ATGCTGATGTTTACCGAGATGGCACTGGTGTCGTGGAGTTTGTACGGAAAGAAGATATGA CCTATGCAGTTCGAAAACTGGATAACACTAAGTTTAGATCTCATGAGGGAGAAACTGCCT ACATCCGGGTTAAAGTTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTCGATCTCGAA GCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTATTCCCCAA GGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACAT AAGATGATTGGTGACACTTTTTTGTAGAACCCATGTTGTATACAGTTTTCCTTTATTCAG TACAATCTTTTCATTTTTTAATTCAAAACTGTTTTTGTTCAGAGTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCGGGAGACGTGGTGTCGCTGCGGGCTCGCTCTCCCGCTCGCTAGGCTTGGTGGGAA GGCCTGTTCTCGAGTCCGCGCTTTTCGTCGCCGCCATGTCGGGAGGTGGTGTGATCCGTG GCCCGGCAGGGAACAACGATTGCCGCATCTACGTGGGTAACTTACCTCCAGACATCCGAA CCAAGGACATTGAGGACGTGTTCTACAAATACGGTGCTATCCGCGACATCGACCTGAAGA ATCGCCGCGGAGGACCGCCCTTCGCCTTCGTTGAGTTCGAGGACCCGCGAGACGCAGAAG ACGCGGTGTATGGTCGCGACGGCTATGATTACGATGGATACCGTCTGCGGGTGGAGTTTC CTCGAAGCGGCCGTGGTACCGGCCGAGGCGGCGGCGGGGGTGGTGGCGGCGGGGCTCCCC GAGGGCGCTATGGCCCCCCATCCAGGCGTTCTGAAAACAGAGTGGTTGTCTCTGGACTGC CTCCAAGTGGAAGCTGGCAGGATTTGAAGGATCACATGCGTGAAGCAGGTGATGTATGTT ATGCTGATGTTTACCGAGATGGCACTGGTGTCGTGGAGTTTGTACGGAAAGAAGATATGA CCTATGCAGTTCGAAAACTGGATAACACTAAGTTTAGATCTCATGAGGGAGAAACTGCCT ACATCCGGGTTAAAGTTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTCGATCTCGAA GCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTATTCCCCAA GGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACAT AAGATGATTGGTGACACTTTTTTGTAGAACCCATGTTGTATACAGTTTTCCTTTATTCAG TACAATCTTTTCATTTTTTAATTCAAAACTGTTTTTGTTCAGAGTGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 471-589, - strand, RNAz p=0.775124 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 471-589, - strand, RNAz p=0.775124 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 137-289, gnl|bosTau2|chr17 (14814919-14814767) | |
| 137-289, gnl|Hg17|chr12 (119370097-119369945) | |
| 137-289, gnl|Mm7|chr5 (114548180-114548332) | |
| 395-671, gnl|bosTau2|chr2 (70868299-70868023) | |
| 395-671, gnl|Hg17|chr12 (119366229-119362662) | |
| 395-671, gnl|Mm7|chr5 (114551412-114553432) | |
| 471-651, gnl|bosTau2|chr19 (4234515-4234335) | |
| 471-651, gnl|canFam2|chr9 (36018779-36018994) | |
| 471-651, gnl|canFam2|chr9 (36018819-36018935) | |
| 471-651, gnl|danRer3|chr21 (37747487-37747696) | |
| 471-651, gnl|danRer3|chr21 (37747523-37747639) | |
| 471-651, gnl|dasNov1|scaffold_1616 (116265-116155) | |
| 471-651, gnl|dasNov1|scaffold_2218 (36599-36799) | |
| 471-651, gnl|echTel1|scaffold_325255 (45875-45657) | |
| 471-651, gnl|echTel1|scaffold_325255 (45834-45718) | |
| 471-651, gnl|fr1|chrUn (15701882-15702080) | |
| 471-651, gnl|fr1|chrUn (15701911-15702027) | |
| 471-651, gnl|galGal2|chr19 (8252363-8252152) | |
| 471-651, gnl|galGal2|chr19 (8252325-8252209) | |
| 471-651, gnl|hg17|chr13 (68880349-68880464) | |
| 471-651, gnl|hg17|chr17 (53438129-53438347) | |
| 471-651, gnl|Hg17|chr17 (53438337-53438157) | |
| 471-651, gnl|loxAfr1|scaffold_22177 (12563-12383) | |
| 471-651, gnl|loxAfr1|scaffold_22177 (12550-12434) | |
| 471-651, gnl|mm7|chr11 (88119157-88118939) | |
| 471-651, gnl|mm7|chr11 (88119117-88119001) | |
| 471-651, gnl|Mm7|chr11 (88118947-88119127) | |
| 471-651, gnl|monDom2|scaffold_56 (5395450-5395230) | |
| 471-651, gnl|monDom2|scaffold_56 (5395408-5395294) | |
| 471-651, gnl|oryCun1|scaffold_204609 (106885-107103) | |
| 471-651, gnl|oryCun1|scaffold_204609 (106925-107041) | |
| 471-651, gnl|panTro1|chr14 (51300522-51300637) | |
| 471-651, gnl|panTro1|chr19_random (39176904-39177122) | |
| 471-651, gnl|rheMac2|chr16 (42233387-42233604) | |
| 471-651, gnl|rheMac2|chr17 (49735792-49735907) | |
| 471-651, gnl|rn3|chr10 (76356512-76356294) | |
| 471-651, gnl|rn3|chr10 (76356472-76356356) | |
| 471-651, gnl|tetNig1|chr16 (3851610-3851408) | |
| 471-651, gnl|tetNig1|chr16 (3851581-3851465) | |
| 471-651, gnl|xenTro1|scaffold_580 (130869-131102) | |
| 471-651, gnl|xenTro1|scaffold_580 (130925-131041) | |
| 474-648, gnl|bosTau2|chr17 (14810754-14810580) | |
| 474-648, gnl|canFam2|chr26 (19391445-19391589) | |
| 474-648, gnl|danRer3|chrNA (92037876-92038020) | |
| 474-648, gnl|dasNov1|scaffold_2218 (36621-36765) | |
| 474-648, gnl|echTel1|scaffold_289721 (1705-1561) | |
| 474-648, gnl|fr1|chrUn (66561456-66561312) | |
| 474-648, gnl|galGal2|chr15 (9221888-9221744) | |
| 474-648, gnl|hg17|chr12 (119364470-119364614) | |
| 474-648, gnl|Hg17|chr12 (119364646-119364472) | |
| 474-648, gnl|loxAfr1|scaffold_22177 (12561-12417) | |
| 474-648, gnl|mm7|chr5 (114553127-114552983) | |
| 474-648, gnl|Mm7|chr5 (114552949-114553123) | |
| 474-648, gnl|monDom2|scaffold_145 (1941909-1941765) | |
| 474-648, gnl|oryCun1|scaffold_102755 (2481-2598) | |
| 474-648, gnl|panTro1|chr10 (122417252-122417396) | |
| 474-648, gnl|rheMac2|chr11 (121481430-121481574) | |
| 474-648, gnl|rn3|chr12 (42410472-42410616) | |
| 474-648, gnl|tetNig1|chr16 (3851592-3851448) | |
| 474-648, gnl|xenTro1|scaffold_9 (4853561-4853705) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-289, gnl|bosTau2|chr17 (14814919-14814767) | |
| 137-289, gnl|Hg17|chr12 (119370097-119369945) | |
| 137-289, gnl|Mm7|chr5 (114548180-114548332) | |
| 395-671, gnl|bosTau2|chr2 (70868299-70868023) | |
| 395-671, gnl|Hg17|chr12 (119366229-119362662) | |
| 395-671, gnl|Mm7|chr5 (114551412-114553432) | |
| 471-651, gnl|bosTau2|chr19 (4234515-4234335) | |
| 471-651, gnl|canFam2|chr9 (36018779-36018994) | |
| 471-651, gnl|canFam2|chr9 (36018819-36018935) | |
| 471-651, gnl|danRer3|chr21 (37747487-37747696) | |
| 471-651, gnl|danRer3|chr21 (37747523-37747639) | |
| 471-651, gnl|dasNov1|scaffold_1616 (116265-116155) | |
| 471-651, gnl|dasNov1|scaffold_2218 (36599-36799) | |
| 471-651, gnl|echTel1|scaffold_325255 (45875-45657) | |
| 471-651, gnl|echTel1|scaffold_325255 (45834-45718) | |
| 471-651, gnl|fr1|chrUn (15701882-15702080) | |
| 471-651, gnl|fr1|chrUn (15701911-15702027) | |
| 471-651, gnl|galGal2|chr19 (8252363-8252152) | |
| 471-651, gnl|galGal2|chr19 (8252325-8252209) | |
| 471-651, gnl|hg17|chr13 (68880349-68880464) | |
| 471-651, gnl|hg17|chr17 (53438129-53438347) | |
| 471-651, gnl|Hg17|chr17 (53438337-53438157) | |
| 471-651, gnl|loxAfr1|scaffold_22177 (12563-12383) | |
| 471-651, gnl|loxAfr1|scaffold_22177 (12550-12434) | |
| 471-651, gnl|mm7|chr11 (88119157-88118939) | |
| 471-651, gnl|mm7|chr11 (88119117-88119001) | |
| 471-651, gnl|Mm7|chr11 (88118947-88119127) | |
| 471-651, gnl|monDom2|scaffold_56 (5395450-5395230) | |
| 471-651, gnl|monDom2|scaffold_56 (5395408-5395294) | |
| 471-651, gnl|oryCun1|scaffold_204609 (106885-107103) | |
| 471-651, gnl|oryCun1|scaffold_204609 (106925-107041) | |
| 471-651, gnl|panTro1|chr14 (51300522-51300637) | |
| 471-651, gnl|panTro1|chr19_random (39176904-39177122) | |
| 471-651, gnl|rheMac2|chr16 (42233387-42233604) | |
| 471-651, gnl|rheMac2|chr17 (49735792-49735907) | |
| 471-651, gnl|rn3|chr10 (76356512-76356294) | |
| 471-651, gnl|rn3|chr10 (76356472-76356356) | |
| 471-651, gnl|tetNig1|chr16 (3851610-3851408) | |
| 471-651, gnl|tetNig1|chr16 (3851581-3851465) | |
| 471-651, gnl|xenTro1|scaffold_580 (130869-131102) | |
| 471-651, gnl|xenTro1|scaffold_580 (130925-131041) | |
| 474-648, gnl|bosTau2|chr17 (14810754-14810580) | |
| 474-648, gnl|canFam2|chr26 (19391445-19391589) | |
| 474-648, gnl|danRer3|chrNA (92037876-92038020) | |
| 474-648, gnl|dasNov1|scaffold_2218 (36621-36765) | |
| 474-648, gnl|echTel1|scaffold_289721 (1705-1561) | |
| 474-648, gnl|fr1|chrUn (66561456-66561312) | |
| 474-648, gnl|galGal2|chr15 (9221888-9221744) | |
| 474-648, gnl|hg17|chr12 (119364470-119364614) | |
| 474-648, gnl|Hg17|chr12 (119364646-119364472) | |
| 474-648, gnl|loxAfr1|scaffold_22177 (12561-12417) | |
| 474-648, gnl|mm7|chr5 (114553127-114552983) | |
| 474-648, gnl|Mm7|chr5 (114552949-114553123) | |
| 474-648, gnl|monDom2|scaffold_145 (1941909-1941765) | |
| 474-648, gnl|oryCun1|scaffold_102755 (2481-2598) | |
| 474-648, gnl|panTro1|chr10 (122417252-122417396) | |
| 474-648, gnl|rheMac2|chr11 (121481430-121481574) | |
| 474-648, gnl|rn3|chr12 (42410472-42410616) | |
| 474-648, gnl|tetNig1|chr16 (3851592-3851448) | |
| 474-648, gnl|xenTro1|scaffold_9 (4853561-4853705) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| eep (0.122564) | |
| jca (0.11396) |