Ss1.1-Pig3-SRG8005P03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGGAAAGCCTGCGCGGTCCTGGAGGAAGGTGTTCAGCGCGGCTCGGGCTGCGGACCTT GGGACAGATGGTTCCACGTGTATCCCACCGAATCCCACATCCCCCGTTGACTTATGTTAT GAGTACTACCTGCGTCCTCCGAAAGCATGTCACATTATGTAAATCGCTTCTAAAATCTGC TTCAAGCTGTCTCTGGACTCCAGGTTAGGATGGATCAGCCTCGGCGGGAGGAGCAGCAGA GCGCCCCCTGCGGGCCCCCAGAGGGAAAGGTTCTCGCGTGTCTCTTGGACGGACTTCCTT GGGCTGGACAGCTCTGCGCAACGCGAGGCTAACGCGGGATGTGGCGGTTCCAGTGAGAAA AGAAAGACTCAGCCAGACTCTGCTTTCTGGAAATTCCTTCAAAAAGAAGAGCTCTTGTCC TCTGGACTGTCCTTTGCTGAGATGTCACATTTGTATTCATGGTCTAGCACAGGGATCCAT GGCATTGGATAAATCTTGTGACCTTACACATGGTCAGAATGTGTTCAAATACATCTCATG GTGGAGAAGTTACCACAGTAATGTTTGTCGGGGCATTTTTAAAAGATCCTACACGACAGT GTTATCTCAATCGTTTAGTCCCTGTCTAGTTACCTCTTAGGGTTGTTGCCCCTGCTTCCA AAACAGCCATATTTAATTTTTCAAAACAGAAATTGTTTCTGAAAACACATTCCTCCTCCT CCAAATAAAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGGAAAGCCTGCGCGGTCCTGGAGGAAGGTGTTCAGCGCGGCTCGGGCTGCGGACCTT GGGACAGATGGTTCCACGTGTATCCCACCGAATCCCACATCCCCCGTTGACTTATGTTAT GAGTACTACCTGCGTCCTCCGAAAGCATGTCACATTATGTAAATCGCTTCTAAAATCTGC TTCAAGCTGTCTCTGGACTCCAGGTTAGGATGGATCAGCCTCGGCGGGAGGAGCAGCAGA GCGCCCCCTGCGGGCCCCCAGAGGGAAAGGTTCTCGCGTGTCTCTTGGACGGACTTCCTT GGGCTGGACAGCTCTGCGCAACGCGAGGCTAACGCGGGATGTGGCGGTTCCAGTGAGAAA AGAAAGACTCAGCCAGACTCTGCTTTCTGGAAATTCCTTCAAAAAGAAGAGCTCTTGTCC TCTGGACTGTCCTTTGCTGAGATGTCACATTTGTATTCATGGTCTAGCACAGGGATCCAT GGCATTGGATAAATCTTGTGACCTTACACATGGTCAGAATGTGTTCAAATACATCTCATG GTGGAGAAGTTACCACAGTAATGTTTGTCGGGGCATTTTTAAAAGATCCTACACGACAGT GTTATCTCAATCGTTTAGTCCCTGTCTAGTTACCTCTTAGGGTTGTTGCCCCTGCTTCCA AAACAGCCATATTTAATTTTTCAAAACAGAAATTGTTTCTGAAAACACATTCCTCCTCCT CCAAATAAAATA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 369-469, - strand, RNAz p=0.707644 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 369-469, - strand, RNAz p=0.707644 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-732, gnl|bosTau2|chr16 (14172688-14171935) | |
| 1-732, gnl|dasNov1|scaffold_255519 (623-1357) | |
| 1-732, gnl|dasNov1|scaffold_255519 (1357-660) | |
| 1-732, gnl|echTel1|scaffold_291906 (54616-55393) | |
| 1-732, gnl|echTel1|scaffold_291906 (55393-54690) | |
| 1-732, gnl|galGal2|chr3 (14175431-14174594) | |
| 1-732, gnl|galGal2|chr3 (14174594-14175395) | |
| 1-732, gnl|Hg17|chr1 (219767081-219766315) | |
| 1-732, gnl|hg17|chr1_random (3010274-3011080) | |
| 1-732, gnl|hg17|chr1_random (2747350-2748119) | |
| 1-732, gnl|loxAfr1|scaffold_8388 (35020-34210) | |
| 1-732, gnl|loxAfr1|scaffold_8388 (34210-34985) | |
| 1-732, gnl|mm7|chr1 (182883030-182882267) | |
| 1-732, gnl|mm7|chr1 (182882267-182882996) | |
| 1-732, gnl|Mm7|chr1 (182882393-182883114) | |
| 1-732, gnl|monDom2|scaffold_13 (30253075-30253957) | |
| 1-732, gnl|monDom2|scaffold_13 (30253957-30253116) | |
| 1-732, gnl|oryCun1|scaffold_88211 (10883-10141) | |
| 1-732, gnl|oryCun1|scaffold_88211 (10141-10846) | |
| 1-732, gnl|panTro1|chr1 (203694660-203695465) | |
| 1-732, gnl|panTro1|chr1 (203695465-203694697) | |
| 1-732, gnl|rheMac2|chr1 (147033525-147032725) | |
| 1-732, gnl|rheMac2|chr1 (147032725-147033488) | |
| 1-732, gnl|rn3|chr13 (99140217-99139483) | |
| 1-732, gnl|rn3|chr13 (99139483-99140183) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-732, gnl|bosTau2|chr16 (14172688-14171935) | |
| 1-732, gnl|dasNov1|scaffold_255519 (623-1357) | |
| 1-732, gnl|dasNov1|scaffold_255519 (1357-660) | |
| 1-732, gnl|echTel1|scaffold_291906 (54616-55393) | |
| 1-732, gnl|echTel1|scaffold_291906 (55393-54690) | |
| 1-732, gnl|galGal2|chr3 (14175431-14174594) | |
| 1-732, gnl|galGal2|chr3 (14174594-14175395) | |
| 1-732, gnl|Hg17|chr1 (219767081-219766315) | |
| 1-732, gnl|hg17|chr1_random (3010274-3011080) | |
| 1-732, gnl|hg17|chr1_random (2747350-2748119) | |
| 1-732, gnl|loxAfr1|scaffold_8388 (35020-34210) | |
| 1-732, gnl|loxAfr1|scaffold_8388 (34210-34985) | |
| 1-732, gnl|mm7|chr1 (182883030-182882267) | |
| 1-732, gnl|mm7|chr1 (182882267-182882996) | |
| 1-732, gnl|Mm7|chr1 (182882393-182883114) | |
| 1-732, gnl|monDom2|scaffold_13 (30253075-30253957) | |
| 1-732, gnl|monDom2|scaffold_13 (30253957-30253116) | |
| 1-732, gnl|oryCun1|scaffold_88211 (10883-10141) | |
| 1-732, gnl|oryCun1|scaffold_88211 (10141-10846) | |
| 1-732, gnl|panTro1|chr1 (203694660-203695465) | |
| 1-732, gnl|panTro1|chr1 (203695465-203694697) | |
| 1-732, gnl|rheMac2|chr1 (147033525-147032725) | |
| 1-732, gnl|rheMac2|chr1 (147032725-147033488) | |
| 1-732, gnl|rn3|chr13 (99140217-99139483) | |
| 1-732, gnl|rn3|chr13 (99139483-99140183) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |