Non-Coding RNA Search

Ss1.1-Pig3-SRG8006A03.3

Sequence:


               
               TGGGGCAGGGAGGTACATGCCACCCAGCCGGGGGGTTCACTTTCACGTGTGCAGGGCATC
CATCTGTACAGTCCAGCCGCCTCCACCAGCCCCCCTCGGTCACTGCCCCCCAGCTGTCCG
TCCATCTGTACAGTCGTAAGCCCGACTCAGTCAGCCCCATCCCATCCTGGCCTTTGACGA
GGCCCCAGGTCTTTGAAGAGATTCTGACACTGGATGTGGTCCCCCTTCTCTCCTAGGTGT
GCCCAGCTGTCCCTCACCCGTTCTTCCCTGTGGGCACATTTGCCATCCATGAGGGGTTCA
CGCTCCCCTCCCCCAGGCAGCACTGCCCGGTCAGAGAGCTGGGAGGAAGCTCACAAATGG
TTAATTTAAGGCTACATCACGAACGGTACAGAGACAAGCGTGCACACACGTCACACGGAC
ACTTCAAATGGTTTCCTCTGTATCAGTTAGTTGCGTGCTGGGATGTTCCCTGAACCAGAA
CTAGAAGGAAAGCTGACCTTTCCCACGTGGCCCCGACCGCTCTGGGCCTGGTCCCTCCTT
TGGGTGCTGCGCCTGTGGCTACTGGGTCCCCATTCCCAGAACACCCTGTTCCCTGCCTGC
TTGGGGGTTGCATGGGGGCAGGGCGAACGCCTTGGGGGGGCAAAGTGCTTTAGAAATAGC
ACCTTCTTTATTGAGAGCATGTTAAATGTTCATTGAGGAAAAGGCTTTGCAGCCAAAGAA
TAGTCGAGCCAGGAGGGCCTGGGCACCCTATGGGGGGGGGGGGAAACAGTGTTCTTGCCA
CCCCCACTGCTCCCAGGGTGGCCTTGAGAAGGAAGAGGCAAGACTGGATGGAACCCGGGG
TGGGGACCAGCCCACTCCTCTCCCTTTGGCGCAGGGCCTGGGGGAGGCAGAGCGTTGCAG
AGGGCGTGTTCTGGGTGCAGGAGGAGCTATGGTGAGGCCCCCACCTACCTGTGCAGGAGT
GGGGAGCAACCCGGGCCTCTTTGGGGGAGGGGAGGCAGGTCCCTGGGGGCCTAGCTCCGT
TGCTGTGATTATTTGCTCTTGGATTTTGCGCTGAAAACAGCATTCCCACTGTCGCGCAGC
TCATTCTCATGAAATCCTGCCATTATTGCTGAATAAAGCTTGTGTGCTCTGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGCAGGGAGGTACATGCCACCCAGCCGGGGGGTTCACTTTCACGTGTGCAGGGCATC
CATCTGTACAGTCCAGCCGCCTCCACCAGCCCCCCTCGGTCACTGCCCCCCAGCTGTCCG
TCCATCTGTACAGTCGTAAGCCCGACTCAGTCAGCCCCATCCCATCCTGGCCTTTGACGA
GGCCCCAGGTCTTTGAAGAGATTCTGACACTGGATGTGGTCCCCCTTCTCTCCTAGGTGT
GCCCAGCTGTCCCTCACCCGTTCTTCCCTGTGGGCACATTTGCCATCCATGAGGGGTTCA
CGCTCCCCTCCCCCAGGCAGCACTGCCCGGTCAGAGAGCTGGGAGGAAGCTCACAAATGG
TTAATTTAAGGCTACATCACGAACGGTACAGAGACAAGCGTGCACACACGTCACACGGAC
ACTTCAAATGGTTTCCTCTGTATCAGTTAGTTGCGTGCTGGGATGTTCCCTGAACCAGAA
CTAGAAGGAAAGCTGACCTTTCCCACGTGGCCCCGACCGCTCTGGGCCTGGTCCCTCCTT
TGGGTGCTGCGCCTGTGGCTACTGGGTCCCCATTCCCAGAACACCCTGTTCCCTGCCTGC
TTGGGGGTTGCATGGGGGCAGGGCGAACGCCTTGGGGGGGCAAAGTGCTTTAGAAATAGC
ACCTTCTTTATTGAGAGCATGTTAAATGTTCATTGAGGAAAAGGCTTTGCAGCCAAAGAA
TAGTCGAGCCAGGAGGGCCTGGGCACCCTATGGGGGGGGGGGGAAACAGTGTTCTTGCCA
CCCCCACTGCTCCCAGGGTGGCCTTGAGAAGGAAGAGGCAAGACTGGATGGAACCCGGGG
TGGGGACCAGCCCACTCCTCTCCCTTTGGCGCAGGGCCTGGGGGAGGCAGAGCGTTGCAG
AGGGCGTGTTCTGGGTGCAGGAGGAGCTATGGTGAGGCCCCCACCTACCTGTGCAGGAGT
GGGGAGCAACCCGGGCCTCTTTGGGGGAGGGGAGGCAGGTCCCTGGGGGCCTAGCTCCGT
TGCTGTGATTATTTGCTCTTGGATTTTGCGCTGAAAACAGCATTCCCACTGTCGCGCAGC
TCATTCTCATGAAATCCTGCCATTATTGCTGAATAAAGCTTGTGTGCTCTGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               235-351, - strand, RNAz p=0.746926
               

               
               549-664, + strand, RNAz p=0.519698
               

               
               751-900, - strand, RNAz p=0.996823

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-351, - strand, RNAz p=0.746926
               

               
               549-664, + strand, RNAz p=0.519698
               

               
               751-900, - strand, RNAz p=0.996823

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               269-387, - strand, RNAmicro p=0.9923

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               269-387, - strand, RNAmicro p=0.9923

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL834349, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL834349, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               54-1132, gnl|bosTau2|chr25 (35183074-35182007)
               

               
               54-1132, gnl|Hg17|chr7 (98090210-98088779)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-1132, gnl|bosTau2|chr25 (35183074-35182007)
               

               
               54-1132, gnl|Hg17|chr7 (98090210-98088779)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fhi (0.339155)
               

               
               nco (0.161734)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               nco (0.161734)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	235-351, - strand, RNAz p=0.746926
	549-664, + strand, RNAz p=0.519698
	751-900, - strand, RNAz p=0.996823

	54-1132, gnl\|bosTau2\|chr25 (35183074-35182007)
	54-1132, gnl\|Hg17\|chr7 (98090210-98088779)