Non-Coding RNA Search

Ss1.1-Pig3-SRG8006A06.5

Sequence:


               
               TTTAATGCTGTAGTTTTATTTTTGTGAAATGTAGATGCGCATACAAGAGTTAAGCAAAAT
AGAAGAGCATCAACATAAGAAAAGTTCAGGTATCTAATATTCGTCTTAATAGTCTATTAA
CTTGTGAAAGCTGGTTAATGGAAATACTATTCCAAATCCATGAGGACACTTAATGGTGTA
TCAGGGCAAAGCTTTGTAAGATGTTTTTGTAACTGAGACCAAAATTGAAGATAGAGCTGC
TTTATTTTCTTGGTTTAAATCTTCCTTTATTTTTGTAGTGATGAAATGCTGATTGTGTAC
AGAGGAATTTGAGAGTGGATTTTTTAAAACACACAACTCACCCAGAAAGGCAGCTAACAC
ACACACACACACACACACACACACACATATATATATATATATATACACACATATATATAT
ATATATTTCAGCCCAGCTCATGTTTTTAAACTTCAGCTTCTAAAAAACTACAAGATATAA
ACCGAAATATATCAACTTCCCAGTTAGTTTCCAATTTTCCCCCAGTCCATTAATTAAATT
TACATAATTAAACTTCAGGCAGGGAAGTAGAATATATTTAGTTACAGGCTGAGGTGTGTT
CTAATATAGAAAACAATGTTAAGAAAGGAAAATGTACCTCTCTCCTGAGGAGCAAAAGGA
TGATGGTCATTCAGAGATACATTGCATTGAATTACATGATAGAAACAATTTTTAGAGGTT
TTTCCTAGCTCCATGATTTGTTCTCTAGAGTGGATCAAGTCTATGAAAAAAAATCCTCTT
CATATATTTCCATTTATAAGCATCTCATTTTTGAAAGTGATCACAGCATGATGATAACTG
TGCTGCTTTTTAGTGTCTGGCTGCATAACGTACAAGTCACAATTTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAATGCTGTAGTTTTATTTTTGTGAAATGTAGATGCGCATACAAGAGTTAAGCAAAAT
AGAAGAGCATCAACATAAGAAAAGTTCAGGTATCTAATATTCGTCTTAATAGTCTATTAA
CTTGTGAAAGCTGGTTAATGGAAATACTATTCCAAATCCATGAGGACACTTAATGGTGTA
TCAGGGCAAAGCTTTGTAAGATGTTTTTGTAACTGAGACCAAAATTGAAGATAGAGCTGC
TTTATTTTCTTGGTTTAAATCTTCCTTTATTTTTGTAGTGATGAAATGCTGATTGTGTAC
AGAGGAATTTGAGAGTGGATTTTTTAAAACACACAACTCACCCAGAAAGGCAGCTAACAC
ACACACACACACACACACACACACACATATATATATATATATATACACACATATATATAT
ATATATTTCAGCCCAGCTCATGTTTTTAAACTTCAGCTTCTAAAAAACTACAAGATATAA
ACCGAAATATATCAACTTCCCAGTTAGTTTCCAATTTTCCCCCAGTCCATTAATTAAATT
TACATAATTAAACTTCAGGCAGGGAAGTAGAATATATTTAGTTACAGGCTGAGGTGTGTT
CTAATATAGAAAACAATGTTAAGAAAGGAAAATGTACCTCTCTCCTGAGGAGCAAAAGGA
TGATGGTCATTCAGAGATACATTGCATTGAATTACATGATAGAAACAATTTTTAGAGGTT
TTTCCTAGCTCCATGATTTGTTCTCTAGAGTGGATCAAGTCTATGAAAAAAAATCCTCTT
CATATATTTCCATTTATAAGCATCTCATTTTTGAAAGTGATCACAGCATGATGATAACTG
TGCTGCTTTTTAGTGTCTGGCTGCATAACGTACAAGTCACAATTTGCT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-395, gnl|bosTau2|chrX (38982361-38981960)
               

               
               1-395, gnl|Hg17|chrX (21430770-21431170)
               

               
               1-395, gnl|Mm7|chrX (152597507-152597078)
               


               
               409-888, gnl|bosTau2|chrX (38981999-38981519)
               

               
               409-888, gnl|Hg17|chrX (21431126-21431601)
               

               
               409-888, gnl|Mm7|chrX (152597117-152596660)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-395, gnl|bosTau2|chrX (38982361-38981960)
               

               
               1-395, gnl|Hg17|chrX (21430770-21431170)
               

               
               1-395, gnl|Mm7|chrX (152597507-152597078)
               


               
               409-888, gnl|bosTau2|chrX (38981999-38981519)
               

               
               409-888, gnl|Hg17|chrX (21431126-21431601)
               

               
               409-888, gnl|Mm7|chrX (152597117-152596660)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               pro (0.512033)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cty (0.10408)

	1-395, gnl\|bosTau2\|chrX (38982361-38981960)
	1-395, gnl\|Hg17\|chrX (21430770-21431170)
	1-395, gnl\|Mm7\|chrX (152597507-152597078)

	409-888, gnl\|bosTau2\|chrX (38981999-38981519)
	409-888, gnl\|Hg17\|chrX (21431126-21431601)
	409-888, gnl\|Mm7\|chrX (152597117-152596660)