Non-Coding RNA Search

Ss1.1-Pig3-SRG8006B02.5

Sequence:


               
               GATAAGCTGAGGGTCTTTGGAAAGATATATCATCTAAAAAACTTTATATTGGAGAAAGGA
AAACAGTTCTGAGTATGTGAGAAAAAGTAATTGTAGCATTAGTTATTACATAATGTAATT
TGTAACTAGTCAATGACAGGATTGATGCTGGCATACTAAAGGAAAACTCTCCGTTTGTCT
TAAAGCTGATGAATCTATTTAGATATTAGGAAACATCAACAAGTCTTGACTATTGGGGAG
TTTAAACACTGGAAGCATCCAGACAATTATTCTGAAAGGATTATCCACTATTGATTATTT
TTAATCAATTGGAGATTGTTGAATATGCAGTGTCTGAAAGGTTAGGCTGCAAGCCACAGT
GGGTGATGTTACAAAGGCTGGGTCCATAAGATAATGACAGATTATAATACTTTGATTATT
GGGAATAAAGTGAGGTTTTTTGGTGACCTCTGATGTAATGCCTGAGTTGTGGTGGTTCCT
GATCATTTATATACTTTGGAAGGTAATAAGTAATGTAAAATTTTGAATTTTTGTTGTACA
TTTTTAGTTATCAACCTCATTTCTCAACCCAGGAAGTTAGAATAATCAATTAATTGTATC
CAGAAAATTGGGCCTAAATCAAATAGTAGAAAGAGTGAAAGATCTTTACATCTAAGTTTT
ATTGTTCATTCAAAATAATAATGTCTAATCCTAAATAAGATTATGTTGAATGTAAATCCT
AATGTAGAAAAGTTATCTTGTCACGTTCCTAGAGCTTCCATTTCAGTGAGCTGTAGTATC
CGTCAAAAACTTGTAACAATCTGTGCAGTCACCCACCCATCCATATGTGATATCTCCTTT
TTCCTGAGGGTCATTTCTAAGGTAAAACCTTGGTGGATTTATATGTGTAGTTAGGAAGGC
TAATAAAAATTTGTTTTTAACAGTAGGCCCAAATATTATGTGCTTTTTTGTTTCCAAAAA
ATGTAAACTATTTTGAAAAATTTAAATCTGTGAACACTTGAAAAGGTCTTTAACACAAGC
ATCAAAACATGTTTGAATTAGAATCTAGCAAGAATGAATTATTAGAAACTCTTTACCCGA
GTCCATATACCTATAAAATGGATTTGGAGAAATTAATTTATTTATTTTAAATTTTTTATT
TTTGTCTTTTTTAGGGCTGCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAAGCTGAGGGTCTTTGGAAAGATATATCATCTAAAAAACTTTATATTGGAGAAAGGA
AAACAGTTCTGAGTATGTGAGAAAAAGTAATTGTAGCATTAGTTATTACATAATGTAATT
TGTAACTAGTCAATGACAGGATTGATGCTGGCATACTAAAGGAAAACTCTCCGTTTGTCT
TAAAGCTGATGAATCTATTTAGATATTAGGAAACATCAACAAGTCTTGACTATTGGGGAG
TTTAAACACTGGAAGCATCCAGACAATTATTCTGAAAGGATTATCCACTATTGATTATTT
TTAATCAATTGGAGATTGTTGAATATGCAGTGTCTGAAAGGTTAGGCTGCAAGCCACAGT
GGGTGATGTTACAAAGGCTGGGTCCATAAGATAATGACAGATTATAATACTTTGATTATT
GGGAATAAAGTGAGGTTTTTTGGTGACCTCTGATGTAATGCCTGAGTTGTGGTGGTTCCT
GATCATTTATATACTTTGGAAGGTAATAAGTAATGTAAAATTTTGAATTTTTGTTGTACA
TTTTTAGTTATCAACCTCATTTCTCAACCCAGGAAGTTAGAATAATCAATTAATTGTATC
CAGAAAATTGGGCCTAAATCAAATAGTAGAAAGAGTGAAAGATCTTTACATCTAAGTTTT
ATTGTTCATTCAAAATAATAATGTCTAATCCTAAATAAGATTATGTTGAATGTAAATCCT
AATGTAGAAAAGTTATCTTGTCACGTTCCTAGAGCTTCCATTTCAGTGAGCTGTAGTATC
CGTCAAAAACTTGTAACAATCTGTGCAGTCACCCACCCATCCATATGTGATATCTCCTTT
TTCCTGAGGGTCATTTCTAAGGTAAAACCTTGGTGGATTTATATGTGTAGTTAGGAAGGC
TAATAAAAATTTGTTTTTAACAGTAGGCCCAAATATTATGTGCTTTTTTGTTTCCAAAAA
ATGTAAACTATTTTGAAAAATTTAAATCTGTGAACACTTGAAAAGGTCTTTAACACAAGC
ATCAAAACATGTTTGAATTAGAATCTAGCAAGAATGAATTATTAGAAACTCTTTACCCGA
GTCCATATACCTATAAAATGGATTTGGAGAAATTAATTTATTTATTTTAAATTTTTTATT
TTTGTCTTTTTTAGGGCTGCACCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               274-389, + strand, RNAz p=0.994302
               

               
               997-1123, - strand, RNAz p=0.990673

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-389, + strand, RNAz p=0.994302
               

               
               997-1123, - strand, RNAz p=0.990673

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               8-1123, gnl|bosTau2|chr12 (10633142-10632016)
               

               
               8-1123, gnl|canFam2|chr22 (3502360-3501525)
               

               
               8-1123, gnl|dasNov1|scaffold_47925 (1253-325)
               

               
               8-1123, gnl|echTel1|scaffold_270185 (872-1676)
               

               
               8-1123, gnl|hg17|chr13 (50910165-50911079)
               

               
               8-1123, gnl|Hg17|chr13 (50911367-50910282)
               

               
               8-1123, gnl|oryCun1|scaffold_85473 (2032-1182)
               

               
               8-1123, gnl|panTro1|chr14_random (17062722-17063634)
               

               
               8-1123, gnl|rheMac2|chr17 (30264333-30265240)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1123, gnl|bosTau2|chr12 (10633142-10632016)
               

               
               8-1123, gnl|canFam2|chr22 (3502360-3501525)
               

               
               8-1123, gnl|dasNov1|scaffold_47925 (1253-325)
               

               
               8-1123, gnl|echTel1|scaffold_270185 (872-1676)
               

               
               8-1123, gnl|hg17|chr13 (50910165-50911079)
               

               
               8-1123, gnl|Hg17|chr13 (50911367-50910282)
               

               
               8-1123, gnl|oryCun1|scaffold_85473 (2032-1182)
               

               
               8-1123, gnl|panTro1|chr14_random (17062722-17063634)
               

               
               8-1123, gnl|rheMac2|chr17 (30264333-30265240)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	274-389, + strand, RNAz p=0.994302
	997-1123, - strand, RNAz p=0.990673

	8-1123, gnl\|bosTau2\|chr12 (10633142-10632016)
	8-1123, gnl\|canFam2\|chr22 (3502360-3501525)
	8-1123, gnl\|dasNov1\|scaffold_47925 (1253-325)
	8-1123, gnl\|echTel1\|scaffold_270185 (872-1676)
	8-1123, gnl\|hg17\|chr13 (50910165-50911079)
	8-1123, gnl\|Hg17\|chr13 (50911367-50910282)
	8-1123, gnl\|oryCun1\|scaffold_85473 (2032-1182)
	8-1123, gnl\|panTro1\|chr14_random (17062722-17063634)
	8-1123, gnl\|rheMac2\|chr17 (30264333-30265240)