Non-Coding RNA Search

Ss1.1-Pig3-SRG8006B04.3

Sequence:


               
               CACTAAGACATTTTCCACTTTTTCATATTGTGTTAGAGAATCCCCTTCCTTCTTTGGAGC
TTTAGATGATTGTATTCACAATCCAGAGGCTTGAATCTGTAACCCGATGTAAACTGCTTT
CCTTTCCGGCAGTCCTTCACCCTGATCACCTGCTCCGCTTGCTTGCTCATTCTCTAATCC
CCATCTCCAATCACAAATGGGATTATTAACCCAACTAGAGAGAGACCAAGTATTTTCTGT
CCATATCACACATAATTAAAGATGTCTCTGAACACGTTTGGGGAGGGTCTTAAAGGGGCA
GGCTCAGAGAAACCTTTGCAGAGGCAGTTTTGCCAACACAAGGGCTCTTTCAAGCCGACT
TTCACAAAGGGAGCCGGCCTTGTTAGTTGGCTTCTGTCTCTTCAGAGCCAGGAAAGTACG
AATTAAGTAGCCTAGAATTAGGAAGGGTGGAATAAGCACTTACTCCCCTGCTTTCCAAAG
TGAAGAGGAGAACCAGGCCAGCTCTCAATGTCAAGCCTGAAGAGCTCGTGGAGGAAGCCA
AAAACAGCGTGGACTGGAAAAGCATCTTGACTCCCTTCAGCCAATAGTTTATGACCTGGA
GGGTCCAACTGGGGTAACCCTGATTTTTGCCAACCGCCTTCCTGCTGAGCCAAAGTTTTC
TCATTCTCCTTCCTCTAGGGAAGCAGCTGAGGCCCAGGGCCTTGCTCCCTGAGAAATTCT
CTTCTCCATCTTTCGGTGCATTGGCCATGTTACTGTGCCAATAGTGTCTTAATTCTTGTT
CCATCTATTCTCAGCTGGCTCTGGACCCCATGTAGGAGTTTGGGGGAGGGGTGGAAATGG
GTATTGTTACCTGTGGTTGATCCTGATGCGTGTATAAAGAGACCCCCTCCCCTCATTTTG
TGTTTTCCATCCCTCTCACTCCCTCAACAGGATTGAAATAAAACATGCTTCTGTTTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTAAGACATTTTCCACTTTTTCATATTGTGTTAGAGAATCCCCTTCCTTCTTTGGAGC
TTTAGATGATTGTATTCACAATCCAGAGGCTTGAATCTGTAACCCGATGTAAACTGCTTT
CCTTTCCGGCAGTCCTTCACCCTGATCACCTGCTCCGCTTGCTTGCTCATTCTCTAATCC
CCATCTCCAATCACAAATGGGATTATTAACCCAACTAGAGAGAGACCAAGTATTTTCTGT
CCATATCACACATAATTAAAGATGTCTCTGAACACGTTTGGGGAGGGTCTTAAAGGGGCA
GGCTCAGAGAAACCTTTGCAGAGGCAGTTTTGCCAACACAAGGGCTCTTTCAAGCCGACT
TTCACAAAGGGAGCCGGCCTTGTTAGTTGGCTTCTGTCTCTTCAGAGCCAGGAAAGTACG
AATTAAGTAGCCTAGAATTAGGAAGGGTGGAATAAGCACTTACTCCCCTGCTTTCCAAAG
TGAAGAGGAGAACCAGGCCAGCTCTCAATGTCAAGCCTGAAGAGCTCGTGGAGGAAGCCA
AAAACAGCGTGGACTGGAAAAGCATCTTGACTCCCTTCAGCCAATAGTTTATGACCTGGA
GGGTCCAACTGGGGTAACCCTGATTTTTGCCAACCGCCTTCCTGCTGAGCCAAAGTTTTC
TCATTCTCCTTCCTCTAGGGAAGCAGCTGAGGCCCAGGGCCTTGCTCCCTGAGAAATTCT
CTTCTCCATCTTTCGGTGCATTGGCCATGTTACTGTGCCAATAGTGTCTTAATTCTTGTT
CCATCTATTCTCAGCTGGCTCTGGACCCCATGTAGGAGTTTGGGGGAGGGGTGGAAATGG
GTATTGTTACCTGTGGTTGATCCTGATGCGTGTATAAAGAGACCCCCTCCCCTCATTTTG
TGTTTTCCATCCCTCTCACTCCCTCAACAGGATTGAAATAAAACATGCTTCTGTTTTTAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               286-436, - strand, RNAz p=0.895094
               

               
               668-778, - strand, RNAz p=0.568823
               

               
               819-928, + strand, RNAz p=0.974538

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               286-436, - strand, RNAz p=0.895094
               

               
               668-778, - strand, RNAz p=0.568823
               

               
               819-928, + strand, RNAz p=0.974538

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-958, gnl|bosTau2|chr2 (59522177-59521218)
               

               
               10-958, gnl|Hg17|chr2 (219285708-219286650)
               

               
               10-958, gnl|Mm7|chr1 (74769672-74770516)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-958, gnl|bosTau2|chr2 (59522177-59521218)
               

               
               10-958, gnl|Hg17|chr2 (219285708-219286650)
               

               
               10-958, gnl|Mm7|chr1 (74769672-74770516)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ese (0.253004)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	286-436, - strand, RNAz p=0.895094
	668-778, - strand, RNAz p=0.568823
	819-928, + strand, RNAz p=0.974538

	10-958, gnl\|bosTau2\|chr2 (59522177-59521218)
	10-958, gnl\|Hg17\|chr2 (219285708-219286650)
	10-958, gnl\|Mm7\|chr1 (74769672-74770516)