Ss1.1-Pig3-SRG8006B18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGGCTTCTCGGTTTACATCAATAGAAACAAGACTGGAGAAATACCAGCCTCTTCCAACA AATCCCTCAACCTGCTGAAGATCAAGCACGGGGACCTGCTGTTTCTGTTCCCCTCGAGCC TCGCTGGCCCCTCTGCGGAGATGGAGACGTCGGCCCCGCTGGCGTTGAAGGCCTGCGGGG CTCCCAACGTGGTGGAAGACGACATCGACCAGTTCCTCAGCCGGCAGGACGGCAAGATCT ACCGGAGCCGCGACCCGCAGCTGTGCCGACACGGGCCTCTGGGGAAGTGTGTGCACTGCG TCCCTCTGGAGCCGTTCGACGAGGACTACCTGAACCACCTGGAGCCGCCCGTGAAGCACA TGTCCTTCCGCGCCTACATCCGCAAGCTGACCGGTGGGGCCGACAAGGGGAAATTTGTTG CCTTGGAGAATATCAGCTGCAAGATTAAATCAGGGTGTGAGGGCCACCTCCCGTGGCCTA ACGGCATCTGTACCAAGTGCCAGCCCAGCGCCATCACGCTGAACAGACAGAAATACAGAC ATGTGGACAATATCATGTTTGAGAATCATACGGTCGCCGACCGCTTCCTTGACTTCTGGA GGAAGACGGGGAACCAGCACTTCGGGTACTTGTATGGACGGTATACGGAGCACAAAGACA TTCCTCTTGGTATCAGGGCTGAAGTAGCTGCGATTTATGAACCTCCTCAGATTGGTACAC AGAACAGCCTGGAGCTTCTCGAAGACCCAAAGGCCGAGGTGGTTGACGAAATTGCTGCCA AACTTGGCCTGAGGAAGGTTGGCTGGATATTTACAGACCTTGTCTCCGAAGACGCCCGGA AGGGCACCGTGCGCTACAGTCGGAACAAGGACACCTACTTCCTGAGTTCGGAGGAATGTA TCACTGCGGGAGACTTCCAGAACAAGCACCCCAACGTGTGCCGGCTCTCCCCAGACGGGC ATTTTGGATCCAAGTTTGTTACTGCCGTGGCTACAGGAGGCCCCGACAACCAGGTGCACT TCGAGGGCTACCACGTGTCGAATCAGTGCATGGCGCTGGTCCGGGACGAGTGCCTGCTGC CCTGCAAGGACGCCCCGGAGCTCGGCTACGCCAAGGAGTCCAGCAGCGAGCAGTACGTGC CGGATGTGTTTTACAAGGACATAGACAAGTTCGGCAACGAGATCACGCAGCTGGCCCGCC CCCTGCCCGTGGAGTACCTGATCATAGACATCACGACGACTTTCCCCAAGGATCCAGTTT ATACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTTTTGGGTGAGA CGCAGGACTTCCACAGCCTGGCCACCTACCTGTCCCAGAGCACCTCGTCCGTCTTCCTGG ACACCGTCTCGGACTTCCACCTCCTGCTGTTCCTGGTCACCAATGACGTCATGCCTCTGC AGGACAGCATCAGCTTGCTGCTGGAGGCCGTGAGGACCAGAAATGAGGAGCTGGCCCAGA CGTGGAAGAAGTCGGAGCAGTGGGCCACCATCGAGCAGCTGTGCAGCACCGTCGGCGTGC AGCTTCCCGGCCTCCAGGAGTACGGCGCCGTCGGGGGCCCCACACACGCAGCCTCGGCCG CCATGTGGGCCTGTCAGCACTGCACCTTCATGAACCAGCCTGGCACCGGCCACTGCGAGA TGTGCAGCCTCCCCCGGACCTAGGGCTCCCGGGCCCTGCGGGCAGGACGGGCCCAGCCCA GCCCCTCGGAAGCCAGGACCTAGGGCCCCGGGGCCCCACGGCGGGCAGCCCTGAAGGGCT TGGTGGCGATGGCAGTGGCTGCCCTGGGGTCTCCGACCCACGAAGCTTCTCGGCACAGGC TCCCCTGGAGGGAGGGGCCAGGCCGGTGTTCTGCGGCCGAGACGGCCTCCTGGCCAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGGCTTCTCGGTTTACATCAATAGAAACAAGACTGGAGAAATACCAGCCTCTTCCAACA AATCCCTCAACCTGCTGAAGATCAAGCACGGGGACCTGCTGTTTCTGTTCCCCTCGAGCC TCGCTGGCCCCTCTGCGGAGATGGAGACGTCGGCCCCGCTGGCGTTGAAGGCCTGCGGGG CTCCCAACGTGGTGGAAGACGACATCGACCAGTTCCTCAGCCGGCAGGACGGCAAGATCT ACCGGAGCCGCGACCCGCAGCTGTGCCGACACGGGCCTCTGGGGAAGTGTGTGCACTGCG TCCCTCTGGAGCCGTTCGACGAGGACTACCTGAACCACCTGGAGCCGCCCGTGAAGCACA TGTCCTTCCGCGCCTACATCCGCAAGCTGACCGGTGGGGCCGACAAGGGGAAATTTGTTG CCTTGGAGAATATCAGCTGCAAGATTAAATCAGGGTGTGAGGGCCACCTCCCGTGGCCTA ACGGCATCTGTACCAAGTGCCAGCCCAGCGCCATCACGCTGAACAGACAGAAATACAGAC ATGTGGACAATATCATGTTTGAGAATCATACGGTCGCCGACCGCTTCCTTGACTTCTGGA GGAAGACGGGGAACCAGCACTTCGGGTACTTGTATGGACGGTATACGGAGCACAAAGACA TTCCTCTTGGTATCAGGGCTGAAGTAGCTGCGATTTATGAACCTCCTCAGATTGGTACAC AGAACAGCCTGGAGCTTCTCGAAGACCCAAAGGCCGAGGTGGTTGACGAAATTGCTGCCA AACTTGGCCTGAGGAAGGTTGGCTGGATATTTACAGACCTTGTCTCCGAAGACGCCCGGA AGGGCACCGTGCGCTACAGTCGGAACAAGGACACCTACTTCCTGAGTTCGGAGGAATGTA TCACTGCGGGAGACTTCCAGAACAAGCACCCCAACGTGTGCCGGCTCTCCCCAGACGGGC ATTTTGGATCCAAGTTTGTTACTGCCGTGGCTACAGGAGGCCCCGACAACCAGGTGCACT TCGAGGGCTACCACGTGTCGAATCAGTGCATGGCGCTGGTCCGGGACGAGTGCCTGCTGC CCTGCAAGGACGCCCCGGAGCTCGGCTACGCCAAGGAGTCCAGCAGCGAGCAGTACGTGC CGGATGTGTTTTACAAGGACATAGACAAGTTCGGCAACGAGATCACGCAGCTGGCCCGCC CCCTGCCCGTGGAGTACCTGATCATAGACATCACGACGACTTTCCCCAAGGATCCAGTTT ATACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTTTTGGGTGAGA CGCAGGACTTCCACAGCCTGGCCACCTACCTGTCCCAGAGCACCTCGTCCGTCTTCCTGG ACACCGTCTCGGACTTCCACCTCCTGCTGTTCCTGGTCACCAATGACGTCATGCCTCTGC AGGACAGCATCAGCTTGCTGCTGGAGGCCGTGAGGACCAGAAATGAGGAGCTGGCCCAGA CGTGGAAGAAGTCGGAGCAGTGGGCCACCATCGAGCAGCTGTGCAGCACCGTCGGCGTGC AGCTTCCCGGCCTCCAGGAGTACGGCGCCGTCGGGGGCCCCACACACGCAGCCTCGGCCG CCATGTGGGCCTGTCAGCACTGCACCTTCATGAACCAGCCTGGCACCGGCCACTGCGAGA TGTGCAGCCTCCCCCGGACCTAGGGCTCCCGGGCCCTGCGGGCAGGACGGGCCCAGCCCA GCCCCTCGGAAGCCAGGACCTAGGGCCCCGGGGCCCCACGGCGGGCAGCCCTGAAGGGCT TGGTGGCGATGGCAGTGGCTGCCCTGGGGTCTCCGACCCACGAAGCTTCTCGGCACAGGC TCCCCTGGAGGGAGGGGCCAGGCCGGTGTTCTGCGGCCGAGACGGCCTCCTGGCCAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 80-264, gnl|bosTau2|chr19 (45229028-45228844) | |
| 80-264, gnl|Hg17|chr17 (77190972-77190788) | |
| 80-264, gnl|Mm7|chr11 (120530592-120530408) | |
| 527-710, gnl|bosTau2|chr19 (45223858-45223675) | |
| 527-710, gnl|canFam2|chr9 (3556072-3555878) | |
| 527-710, gnl|danRer3|chr12 (33266517-33266332) | |
| 527-710, gnl|dasNov1|scaffold_11 (470144-470341) | |
| 527-710, gnl|fr1|chrUn (140500543-140500732) | |
| 527-710, gnl|galGal2|chr18 (8903872-8903685) | |
| 527-710, gnl|hg17|chr17 (77182005-77182199) | |
| 527-710, gnl|Hg17|chr17 (77182197-77182014) | |
| 527-710, gnl|loxAfr1|scaffold_10312 (33565-33759) | |
| 527-710, gnl|mm7|chr11 (120522596-120522790) | |
| 527-710, gnl|Mm7|chr11 (120522788-120522605) | |
| 527-710, gnl|monDom2|scaffold_18 (14219987-14220181) | |
| 527-710, gnl|panTro1|chr19 (80916724-80916918) | |
| 527-710, gnl|rn3|chr10 (109856426-109856620) | |
| 527-710, gnl|tetNig1|chr2 (2031252-2031439) | |
| 527-710, gnl|xenTro1|scaffold_722 (473498-473686) | |
| 994-1158, gnl|bosTau2|chr19 (45214545-45214381) | |
| 994-1158, gnl|canFam2|chr9 (3568543-3568353) | |
| 994-1158, gnl|danRer3|chr12 (33269664-33269474) | |
| 994-1158, gnl|dasNov1|scaffold_36731 (10601-10410) | |
| 994-1158, gnl|echTel1|scaffold_214376 (2516-2709) | |
| 994-1158, gnl|fr1|chrUn (140499648-140499817) | |
| 994-1158, gnl|galGal2|chr18 (8909757-8909577) | |
| 994-1158, gnl|hg17|chr17 (77166404-77166594) | |
| 994-1158, gnl|Hg17|chr17 (77166570-77166406) | |
| 994-1158, gnl|loxAfr1|scaffold_10312 (19555-19748) | |
| 994-1158, gnl|mm7|chr11 (120513248-120513443) | |
| 994-1158, gnl|Mm7|chr11 (120513414-120513250) | |
| 994-1158, gnl|monDom2|scaffold_18 (14206731-14206923) | |
| 994-1158, gnl|panTro1|chr19 (80901142-80901332) | |
| 994-1158, gnl|rheMac2|chr16 (77049378-77049568) | |
| 994-1158, gnl|rn3|chr10 (109845489-109845679) | |
| 994-1158, gnl|tetNig1|chr2 (2030378-2030544) | |
| 994-1158, gnl|xenTro1|scaffold_722 (470765-470943) | |
| 1324-1443, gnl|bosTau2|chr19 (45200569-45200450) | |
| 1324-1443, gnl|Hg17|chr17 (77144999-77144880) | |
| 1324-1443, gnl|Mm7|chr11 (120493706-120493587) | |
| 1546-1896, gnl|bosTau2|chr19 (45195354-45195009) | |
| 1546-1896, gnl|Hg17|chr17 (77136886-77136525) | |
| 1546-1896, gnl|Mm7|chr11 (120491671-120491326) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 80-264, gnl|bosTau2|chr19 (45229028-45228844) | |
| 80-264, gnl|Hg17|chr17 (77190972-77190788) | |
| 80-264, gnl|Mm7|chr11 (120530592-120530408) | |
| 527-710, gnl|bosTau2|chr19 (45223858-45223675) | |
| 527-710, gnl|canFam2|chr9 (3556072-3555878) | |
| 527-710, gnl|danRer3|chr12 (33266517-33266332) | |
| 527-710, gnl|dasNov1|scaffold_11 (470144-470341) | |
| 527-710, gnl|fr1|chrUn (140500543-140500732) | |
| 527-710, gnl|galGal2|chr18 (8903872-8903685) | |
| 527-710, gnl|hg17|chr17 (77182005-77182199) | |
| 527-710, gnl|Hg17|chr17 (77182197-77182014) | |
| 527-710, gnl|loxAfr1|scaffold_10312 (33565-33759) | |
| 527-710, gnl|mm7|chr11 (120522596-120522790) | |
| 527-710, gnl|Mm7|chr11 (120522788-120522605) | |
| 527-710, gnl|monDom2|scaffold_18 (14219987-14220181) | |
| 527-710, gnl|panTro1|chr19 (80916724-80916918) | |
| 527-710, gnl|rn3|chr10 (109856426-109856620) | |
| 527-710, gnl|tetNig1|chr2 (2031252-2031439) | |
| 527-710, gnl|xenTro1|scaffold_722 (473498-473686) | |
| 994-1158, gnl|bosTau2|chr19 (45214545-45214381) | |
| 994-1158, gnl|canFam2|chr9 (3568543-3568353) | |
| 994-1158, gnl|danRer3|chr12 (33269664-33269474) | |
| 994-1158, gnl|dasNov1|scaffold_36731 (10601-10410) | |
| 994-1158, gnl|echTel1|scaffold_214376 (2516-2709) | |
| 994-1158, gnl|fr1|chrUn (140499648-140499817) | |
| 994-1158, gnl|galGal2|chr18 (8909757-8909577) | |
| 994-1158, gnl|hg17|chr17 (77166404-77166594) | |
| 994-1158, gnl|Hg17|chr17 (77166570-77166406) | |
| 994-1158, gnl|loxAfr1|scaffold_10312 (19555-19748) | |
| 994-1158, gnl|mm7|chr11 (120513248-120513443) | |
| 994-1158, gnl|Mm7|chr11 (120513414-120513250) | |
| 994-1158, gnl|monDom2|scaffold_18 (14206731-14206923) | |
| 994-1158, gnl|panTro1|chr19 (80901142-80901332) | |
| 994-1158, gnl|rheMac2|chr16 (77049378-77049568) | |
| 994-1158, gnl|rn3|chr10 (109845489-109845679) | |
| 994-1158, gnl|tetNig1|chr2 (2030378-2030544) | |
| 994-1158, gnl|xenTro1|scaffold_722 (470765-470943) | |
| 1324-1443, gnl|bosTau2|chr19 (45200569-45200450) | |
| 1324-1443, gnl|Hg17|chr17 (77144999-77144880) | |
| 1324-1443, gnl|Mm7|chr11 (120493706-120493587) | |
| 1546-1896, gnl|bosTau2|chr19 (45195354-45195009) | |
| 1546-1896, gnl|Hg17|chr17 (77136886-77136525) | |
| 1546-1896, gnl|Mm7|chr11 (120491671-120491326) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| lnt (0.142308) | |
| clu (0.119646) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| lnt (0.142308) | |
| clu (0.119646) | |
| ebs (0.118301) |