Ss1.1-Pig3-SRG8006C06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCTGCAGTGTCTCCATATTATGTCACATGTTCTATTTGCACTGTTGCAATATGGGTCA AAAATCTTGTGGCATGGGGTAAGGGAATGTCAGTATCTCATTTGTCCCATTTGTTCTGTT ACACTTCGCTGAACTGATCTACCCTCATAAACCTGTGATCATCACCTAAATGTAAGTTGC TAATGTGTCACTTTTTGCTTGGTTATTTCAACCAAGCATTGAATATATATATGTATCTGT ATGTGTGTATACACACACATGCACACACATATATGTATGTTCAATGCTGCTATATATAAT CAGGTGTGGCATGGTTTGTCAGTCTGGTTCTAGGGGTGAGTGGATTCAAATCATTTGCAC TGTGCTGTTAAATGATCCTTGTTTGCTTGCTATTTCCTACTTTTTACAGGCATCATAATA AAAGCTAGACTATTTCTTTGGGGGAAAAGAGACTTATTTAATGTAATTTAAAGACTTTTC CAATAGAAGATGAAATATTATTGAAAATAATATCTATTTTTTAGCTTTCAGCAATTGATG GTGCTTTGTTGTGGTGTCTGCTGGAAGTCTCCTGCCATTATAGGAATTCTCATTAACCTC ACTGAGAAAGAATCTTGCTTGTTAGCTTCTCTAGATCTCTATTCTAAACAATCTGTTAGT GATGATAAATTCTGTAGGAGGATCTATCCTGAGCCGTTAACTTCCTGTAAGGGGAAAATG GGTGGGTTACCAGAAAGACCATTGAAGCAGGGTGGGCGGGGGTGGAGGGTTGGGCATTTG TCTTGAGAATTAAAAACTACGAAACACTTTTGTACACAACTGATTTTTTAAAAAAATAAA CACATTTTTAAAGATGTTGAATTTTTTTTCCCCCCCTTACTGGGAATTCTTTAAAATAAA TGCATGCATATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCTGCAGTGTCTCCATATTATGTCACATGTTCTATTTGCACTGTTGCAATATGGGTCA AAAATCTTGTGGCATGGGGTAAGGGAATGTCAGTATCTCATTTGTCCCATTTGTTCTGTT ACACTTCGCTGAACTGATCTACCCTCATAAACCTGTGATCATCACCTAAATGTAAGTTGC TAATGTGTCACTTTTTGCTTGGTTATTTCAACCAAGCATTGAATATATATATGTATCTGT ATGTGTGTATACACACACATGCACACACATATATGTATGTTCAATGCTGCTATATATAAT CAGGTGTGGCATGGTTTGTCAGTCTGGTTCTAGGGGTGAGTGGATTCAAATCATTTGCAC TGTGCTGTTAAATGATCCTTGTTTGCTTGCTATTTCCTACTTTTTACAGGCATCATAATA AAAGCTAGACTATTTCTTTGGGGGAAAAGAGACTTATTTAATGTAATTTAAAGACTTTTC CAATAGAAGATGAAATATTATTGAAAATAATATCTATTTTTTAGCTTTCAGCAATTGATG GTGCTTTGTTGTGGTGTCTGCTGGAAGTCTCCTGCCATTATAGGAATTCTCATTAACCTC ACTGAGAAAGAATCTTGCTTGTTAGCTTCTCTAGATCTCTATTCTAAACAATCTGTTAGT GATGATAAATTCTGTAGGAGGATCTATCCTGAGCCGTTAACTTCCTGTAAGGGGAAAATG GGTGGGTTACCAGAAAGACCATTGAAGCAGGGTGGGCGGGGGTGGAGGGTTGGGCATTTG TCTTGAGAATTAAAAACTACGAAACACTTTTGTACACAACTGATTTTTTAAAAAAATAAA CACATTTTTAAAGATGTTGAATTTTTTTTCCCCCCCTTACTGGGAATTCTTTAAAATAAA TGCATGCATATT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 23-117, - strand, RNAz p=0.540809 | |
| 780-899, + strand, RNAz p=0.872137 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 23-117, - strand, RNAz p=0.540809 | |
| 780-899, + strand, RNAz p=0.872137 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-242, gnl|bosTau2|chrX (41499258-41499502) | |
| 1-242, gnl|canFam2|chr3 (75539763-75539189) | |
| 1-242, gnl|canFam2|chr3 (75539189-75539773) | |
| 1-242, gnl|canFam2|chr3 (75539773-75539189) | |
| 1-242, gnl|danRer3|chrNA (181363529-181362985) | |
| 1-242, gnl|danRer3|chrNA (181362985-181363541) | |
| 1-242, gnl|danRer3|chrNA (181884794-181884223) | |
| 1-242, gnl|dasNov1|scaffold_60831 (6188-6753) | |
| 1-242, gnl|dasNov1|scaffold_60831 (6753-6177) | |
| 1-242, gnl|dasNov1|scaffold_60831 (6177-6753) | |
| 1-242, gnl|hg17|chr1 (116448399-116448945) | |
| 1-242, gnl|Hg17|chr4 (39606154-39606365) | |
| 1-242, gnl|hg17|chrX (83943100-83943656) | |
| 1-242, gnl|hg17|chrX (83907656-83908227) | |
| 1-242, gnl|loxAfr1|scaffold_10708 (9775-9219) | |
| 1-242, gnl|loxAfr1|scaffold_10708 (9219-9787) | |
| 1-242, gnl|loxAfr1|scaffold_10708 (9798-9219) | |
| 1-242, gnl|mm7|chr5 (64952996-64953523) | |
| 1-242, gnl|mm7|chr5 (64953523-64952989) | |
| 1-242, gnl|mm7|chr5 (64952989-64953523) | |
| 1-242, gnl|monDom2|scaffold_26 (4884355-4884898) | |
| 1-242, gnl|monDom2|scaffold_26 (4884890-4884343) | |
| 1-242, gnl|monDom2|scaffold_26 (4884328-4884893) | |
| 1-242, gnl|oryCun1|scaffold_181432 (95378-94792) | |
| 1-242, gnl|oryCun1|scaffold_181432 (94792-95380) | |
| 1-242, gnl|oryCun1|scaffold_181432 (95380-94792) | |
| 1-242, gnl|panTro1|chr1 (116256577-116257117) | |
| 1-242, gnl|panTro1|chrX (86568146-86568702) | |
| 1-242, gnl|panTro1|chrX (86531368-86531939) | |
| 1-242, gnl|rheMac2|chr1 (119169320-119169867) | |
| 1-242, gnl|rheMac2|chrX (83705444-83706000) | |
| 1-242, gnl|rheMac2|chrX (83706016-83705444) | |
| 1-242, gnl|rn3|chr14 (45352510-45351968) | |
| 1-242, gnl|rn3|chr14 (45351968-45352512) | |
| 1-242, gnl|rn3|chr14 (45352512-45351968) | |
| 269-906, gnl|bosTau2|chrX (41499493-41500131) | |
| 269-906, gnl|Hg17|chr4 (39606366-39606960) | |
| 269-906, gnl|Mm7|chr5 (64953184-64953786) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-242, gnl|bosTau2|chrX (41499258-41499502) | |
| 1-242, gnl|canFam2|chr3 (75539763-75539189) | |
| 1-242, gnl|canFam2|chr3 (75539189-75539773) | |
| 1-242, gnl|canFam2|chr3 (75539773-75539189) | |
| 1-242, gnl|danRer3|chrNA (181363529-181362985) | |
| 1-242, gnl|danRer3|chrNA (181362985-181363541) | |
| 1-242, gnl|danRer3|chrNA (181884794-181884223) | |
| 1-242, gnl|dasNov1|scaffold_60831 (6188-6753) | |
| 1-242, gnl|dasNov1|scaffold_60831 (6753-6177) | |
| 1-242, gnl|dasNov1|scaffold_60831 (6177-6753) | |
| 1-242, gnl|hg17|chr1 (116448399-116448945) | |
| 1-242, gnl|Hg17|chr4 (39606154-39606365) | |
| 1-242, gnl|hg17|chrX (83943100-83943656) | |
| 1-242, gnl|hg17|chrX (83907656-83908227) | |
| 1-242, gnl|loxAfr1|scaffold_10708 (9775-9219) | |
| 1-242, gnl|loxAfr1|scaffold_10708 (9219-9787) | |
| 1-242, gnl|loxAfr1|scaffold_10708 (9798-9219) | |
| 1-242, gnl|mm7|chr5 (64952996-64953523) | |
| 1-242, gnl|mm7|chr5 (64953523-64952989) | |
| 1-242, gnl|mm7|chr5 (64952989-64953523) | |
| 1-242, gnl|monDom2|scaffold_26 (4884355-4884898) | |
| 1-242, gnl|monDom2|scaffold_26 (4884890-4884343) | |
| 1-242, gnl|monDom2|scaffold_26 (4884328-4884893) | |
| 1-242, gnl|oryCun1|scaffold_181432 (95378-94792) | |
| 1-242, gnl|oryCun1|scaffold_181432 (94792-95380) | |
| 1-242, gnl|oryCun1|scaffold_181432 (95380-94792) | |
| 1-242, gnl|panTro1|chr1 (116256577-116257117) | |
| 1-242, gnl|panTro1|chrX (86568146-86568702) | |
| 1-242, gnl|panTro1|chrX (86531368-86531939) | |
| 1-242, gnl|rheMac2|chr1 (119169320-119169867) | |
| 1-242, gnl|rheMac2|chrX (83705444-83706000) | |
| 1-242, gnl|rheMac2|chrX (83706016-83705444) | |
| 1-242, gnl|rn3|chr14 (45352510-45351968) | |
| 1-242, gnl|rn3|chr14 (45351968-45352512) | |
| 1-242, gnl|rn3|chr14 (45352512-45351968) | |
| 269-906, gnl|bosTau2|chrX (41499493-41500131) | |
| 269-906, gnl|Hg17|chr4 (39606366-39606960) | |
| 269-906, gnl|Mm7|chr5 (64953184-64953786) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| cje (0.165235) | |
| csk (0.140746) | |
| che (0.136314) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| cje (0.165235) | |
| csk (0.140746) | |
| che (0.136314) |