Non-Coding RNA Search

Ss1.1-Pig3-SRG8006D01.3

Sequence:


               
               GAATTTTGGAATTTTAATGAAACTTCACTTTTGCGTTACAGGGAAAATGATGTTGGTTAA
TGGTCAATCTCAGCAATCAATTGTGCAGGAAAAAATACTACCCTGAAAAAGAACTTTGTG
TTCAGATTTCTTGACACGTGATCACATTCAAAGTAATATATTAATAAAAGATCACCTAAG
TTACACAACCAGTGACAGGGAATCCTGGATTTGAGCAATGCTGGGCATGATTCTTTCTTA
CCTAAGGGCCTCTCCTGTGTAAGAAATTCAAGATCACTCTGCAGCCATGCCCTTGGGCTG
GCAGGTGATACTGCCACCTGCGTTCCCCAAAAATGCCACTACCAGCCTCCCCTATCCACT
CAGTTTTGTATATCTCACTATACGGACTTTGTAGAAAATGTATATTTTATAGTTTGCACA
GTATTACTTTACAGGAAGGGTGGCGGAGCATCTACAGCCTAGAGCCCCAGAGCAACAGCT
TGACTTTGTGGCTCCAATTTTAACTGCATCTCATTTTTCTAGCATGGTAATAACTAATGT
GTAACTCCTTCGAGAGAAGGCGCTCCCTTGTCTGTACCCATCAGAATGTTCTCTTGACAC
TTCCATGTTGGTTCTTCTTTAACTTTTCTTTTTGTACATTTTTTTTTCTAAAGAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTTTGGAATTTTAATGAAACTTCACTTTTGCGTTACAGGGAAAATGATGTTGGTTAA
TGGTCAATCTCAGCAATCAATTGTGCAGGAAAAAATACTACCCTGAAAAAGAACTTTGTG
TTCAGATTTCTTGACACGTGATCACATTCAAAGTAATATATTAATAAAAGATCACCTAAG
TTACACAACCAGTGACAGGGAATCCTGGATTTGAGCAATGCTGGGCATGATTCTTTCTTA
CCTAAGGGCCTCTCCTGTGTAAGAAATTCAAGATCACTCTGCAGCCATGCCCTTGGGCTG
GCAGGTGATACTGCCACCTGCGTTCCCCAAAAATGCCACTACCAGCCTCCCCTATCCACT
CAGTTTTGTATATCTCACTATACGGACTTTGTAGAAAATGTATATTTTATAGTTTGCACA
GTATTACTTTACAGGAAGGGTGGCGGAGCATCTACAGCCTAGAGCCCCAGAGCAACAGCT
TGACTTTGTGGCTCCAATTTTAACTGCATCTCATTTTTCTAGCATGGTAATAACTAATGT
GTAACTCCTTCGAGAGAAGGCGCTCCCTTGTCTGTACCCATCAGAATGTTCTCTTGACAC
TTCCATGTTGGTTCTTCTTTAACTTTTCTTTTTGTACATTTTTTTTTCTAAAGAAAAAAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr8 (48493238-48492566)
               

               
               1-660, gnl|Hg17|chr9 (101166280-101166957)
               

               
               1-660, gnl|Mm7|chr4 (49351897-49352575)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr8 (48493238-48492566)
               

               
               1-660, gnl|Hg17|chr9 (101166280-101166957)
               

               
               1-660, gnl|Mm7|chr4 (49351897-49352575)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-660, gnl\|bosTau2\|chr8 (48493238-48492566)
	1-660, gnl\|Hg17\|chr9 (101166280-101166957)
	1-660, gnl\|Mm7\|chr4 (49351897-49352575)