Non-Coding RNA Search

Ss1.1-Pig3-SRG8006D19.3

Sequence:


               
               AGACGCGGAGCTGGGAAAAGGGAGGCAGAGGAGGCGGAGGCGGAGGCAGAGCCGGGCGCT
GAGACCGACCGACAGACCCGCGGGGCCGGGCCACGCAGAGCCGGCCCAGCGAGTGCCCCC
CCTCCCCGCGACCCGAGCCAGGTCCGAGAGGCGGCCCCCGGCCTGGCCTGGGAGCCAGGA
GCGCCCAGAGCAGATCCCGAATCAGGCTTCCCTCGGCCTCCGACGAGGGCTGGCCCTTTG
GAAGGCGCCTTCTTCAACACAGGACCAGGCAGGCCACCATGACCGAGAACTCCACGTCCA
CCCCGGCGGCCAAGCCCAAGCGGGCCAAGGCCTCCAAGAAGTCCACAGACCACCCCAAGT
ATTCAGACATGATCGTGGCTGCCATCCAGGCAGAGAAGAACCGCGCTGGCTCCTCGCGCC
AGTCCATCCAGAAGTACATCAAGAGCCACTACAAGGTGGGTGAGAACGCCGACTCCCAGA
TCAAGTTGTCCATCAAGCGCTTGGTCACCACCGGGGTCCTCAAGCAGACCAAAGGGGTGG
GTGCCTCGGGGTCTTTCCGCCTGGCCAAGAGCGACGAGCCCAAGAGGTCAGTGGCCTTCA
AGAAGACGAAGAAGGAAGTCAAGAAGGTGGCCACGCCAAAGAAGACGGCCAAGCCCAAGA
AGGCTGCCTCCAAAGCCCCAAGCAAGAAGCCCAAAGCCACCCCGGTCAAGAAGGCCAAGA
AGAAGCCGGCTGCCACGCCCAAGAAAGCCAAAAAACCCAAGACTGTCAAAGCCAAACCAG
TCAAGGCATCCAAGCCTAAGAAGGCCAAACCAGTGAAGCCCAAAGCGAAGTCCAGTGCCA
AGAGGGCCGGCAAGAAGAAGTGACAATGAGGCTTTTCTTGTGGACACTCCTGCCTGTCTC
CTGTTTTCTGTAAATACTTTTTTCTTCTCACTTGATCCTCATCTGCAACCCTTTGCCCCT
TCCTCGTCTGACTTTATAAAGAGACAGAATTTGGATTCCTCAGAAATTAGGGAATAATTC
ATTTCTCTTGAAGCAGTCATGCAAGGACAGCAACGACAAATCTCTGTAATGATGTACTTC
TATTTTGTTTTGTTAATTTGTCATTAATCTACTTATGGTTTGGGGGATTTGGGTGGGTTT
GTGTGTTTTGTTCAGTTGGATGGTTGATTCATTCGGAAGGTAAAAGTCGGGGGAGAATGG
GGCAAGGTAGCTTGTGGCAAGATGACAGGGAGCCCAGCCTTGGTAAGGTTTTAAGTTGAA
CACTCCTCGTGAGTTGCAGAACGTTAGCGGAGAGGAGAGAGGTGGCATCAGTGGGACGGC
AAAGGAGGGAGCAGGGGAAAAAAAAAAACAAAAAACCCTGTCTGGGCTGATTTGCACCTC
CCAGTGGTGAGCAGTGGGGCATCCACATCCAGTTTCCTTCTCACTTCTGTTCCTTTGCCC
CTGTAGCCTCCCTATTGTCCTAGGTGAGGGGAGGAGGTCAAAATGACAGCTGGTCCTAGA
AATTGTGGCTTCTCAGAATCAGCTGGAGACTAGCTATTGGGAGACCTCTGTGGCTTCCGA
AGGTCTCCTGTGAAACAGCAGAGGAAGCTTTGGGGGAAGGGTGGGGAGTGGGTCAGCCAA
GTGCCTCAGAGTGCCCTGTTAAAACTTGGTTTTTTTCCACACCATCGGATTGCATCCTAG
GAGGACCTTTTTTCCTTTTCGCCTGATTTTTGGTTCCTCCTGTACAAGAGATGGCTTTGC
CAGGTGGTCGGCCGGGGCTCCAGCCCTGCCACCCGCCACTTAAAAACCTCCTGACCTCTT
TACTTCTGAGTCTTTTATGAGTAGTTGTAGATGGGGGAGGAGGGGGGCGGGGAGTGGACA
GTGAGACATACTGCAGTTGACTTTGAATTGCTAAGTAGTTTTACAGAGCTAGGTCTGTGT
GTATGTGTGTATATGTATATATACAATCTAGGGCTAGGACTTAACGTTTCACACCCGGGA
GCTGGGAGAAAAAACCTGTACAGTCTTTCCCTTTTTTGTAATAAAATGGGAAAACGCGCA
ATTGTGCGTCCTTCCCCTCCCCCCCCCACCATCCCAACCCCCTTTTACTTTTTAAACAAG
TGTTATTTGTGCCGGGAAGAATTTGCTGTCTTTGTAATTTTGAAACTTTAAAATAAAATT
GAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGCGGAGCTGGGAAAAGGGAGGCAGAGGAGGCGGAGGCGGAGGCAGAGCCGGGCGCT
GAGACCGACCGACAGACCCGCGGGGCCGGGCCACGCAGAGCCGGCCCAGCGAGTGCCCCC
CCTCCCCGCGACCCGAGCCAGGTCCGAGAGGCGGCCCCCGGCCTGGCCTGGGAGCCAGGA
GCGCCCAGAGCAGATCCCGAATCAGGCTTCCCTCGGCCTCCGACGAGGGCTGGCCCTTTG
GAAGGCGCCTTCTTCAACACAGGACCAGGCAGGCCACCATGACCGAGAACTCCACGTCCA
CCCCGGCGGCCAAGCCCAAGCGGGCCAAGGCCTCCAAGAAGTCCACAGACCACCCCAAGT
ATTCAGACATGATCGTGGCTGCCATCCAGGCAGAGAAGAACCGCGCTGGCTCCTCGCGCC
AGTCCATCCAGAAGTACATCAAGAGCCACTACAAGGTGGGTGAGAACGCCGACTCCCAGA
TCAAGTTGTCCATCAAGCGCTTGGTCACCACCGGGGTCCTCAAGCAGACCAAAGGGGTGG
GTGCCTCGGGGTCTTTCCGCCTGGCCAAGAGCGACGAGCCCAAGAGGTCAGTGGCCTTCA
AGAAGACGAAGAAGGAAGTCAAGAAGGTGGCCACGCCAAAGAAGACGGCCAAGCCCAAGA
AGGCTGCCTCCAAAGCCCCAAGCAAGAAGCCCAAAGCCACCCCGGTCAAGAAGGCCAAGA
AGAAGCCGGCTGCCACGCCCAAGAAAGCCAAAAAACCCAAGACTGTCAAAGCCAAACCAG
TCAAGGCATCCAAGCCTAAGAAGGCCAAACCAGTGAAGCCCAAAGCGAAGTCCAGTGCCA
AGAGGGCCGGCAAGAAGAAGTGACAATGAGGCTTTTCTTGTGGACACTCCTGCCTGTCTC
CTGTTTTCTGTAAATACTTTTTTCTTCTCACTTGATCCTCATCTGCAACCCTTTGCCCCT
TCCTCGTCTGACTTTATAAAGAGACAGAATTTGGATTCCTCAGAAATTAGGGAATAATTC
ATTTCTCTTGAAGCAGTCATGCAAGGACAGCAACGACAAATCTCTGTAATGATGTACTTC
TATTTTGTTTTGTTAATTTGTCATTAATCTACTTATGGTTTGGGGGATTTGGGTGGGTTT
GTGTGTTTTGTTCAGTTGGATGGTTGATTCATTCGGAAGGTAAAAGTCGGGGGAGAATGG
GGCAAGGTAGCTTGTGGCAAGATGACAGGGAGCCCAGCCTTGGTAAGGTTTTAAGTTGAA
CACTCCTCGTGAGTTGCAGAACGTTAGCGGAGAGGAGAGAGGTGGCATCAGTGGGACGGC
AAAGGAGGGAGCAGGGGAAAAAAAAAAACAAAAAACCCTGTCTGGGCTGATTTGCACCTC
CCAGTGGTGAGCAGTGGGGCATCCACATCCAGTTTCCTTCTCACTTCTGTTCCTTTGCCC
CTGTAGCCTCCCTATTGTCCTAGGTGAGGGGAGGAGGTCAAAATGACAGCTGGTCCTAGA
AATTGTGGCTTCTCAGAATCAGCTGGAGACTAGCTATTGGGAGACCTCTGTGGCTTCCGA
AGGTCTCCTGTGAAACAGCAGAGGAAGCTTTGGGGGAAGGGTGGGGAGTGGGTCAGCCAA
GTGCCTCAGAGTGCCCTGTTAAAACTTGGTTTTTTTCCACACCATCGGATTGCATCCTAG
GAGGACCTTTTTTCCTTTTCGCCTGATTTTTGGTTCCTCCTGTACAAGAGATGGCTTTGC
CAGGTGGTCGGCCGGGGCTCCAGCCCTGCCACCCGCCACTTAAAAACCTCCTGACCTCTT
TACTTCTGAGTCTTTTATGAGTAGTTGTAGATGGGGGAGGAGGGGGGCGGGGAGTGGACA
GTGAGACATACTGCAGTTGACTTTGAATTGCTAAGTAGTTTTACAGAGCTAGGTCTGTGT
GTATGTGTGTATATGTATATATACAATCTAGGGCTAGGACTTAACGTTTCACACCCGGGA
GCTGGGAGAAAAAACCTGTACAGTCTTTCCCTTTTTTGTAATAAAATGGGAAAACGCGCA
ATTGTGCGTCCTTCCCCTCCCCCCCCCACCATCCCAACCCCCTTTTACTTTTTAAACAAG
TGTTATTTGTGCCGGGAAGAATTTGCTGTCTTTGTAATTTTGAAACTTTAAAATAAAATT
GAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6FG88_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FG88_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               157-276, - strand, RNAz p=0.549194
               

               
               1434-1588, + strand, RNAz p=0.999766

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-276, - strand, RNAz p=0.549194
               

               
               1434-1588, + strand, RNAz p=0.999766

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1237, gnl|bosTau2|chr5 (67178848-67177615)
               

               
               1-1237, gnl|Hg17|chr22 (36525736-36527006)
               

               
               1-1237, gnl|Mm7|chr15 (79111402-79112604)
               


               
               1246-1837, gnl|bosTau2|chr5 (67177577-67177002)
               

               
               1246-1837, gnl|Hg17|chr22 (36527044-36527612)
               

               
               1246-1837, gnl|Mm7|chr15 (79112633-79113158)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1237, gnl|bosTau2|chr5 (67178848-67177615)
               

               
               1-1237, gnl|Hg17|chr22 (36525736-36527006)
               

               
               1-1237, gnl|Mm7|chr15 (79111402-79112604)
               


               
               1246-1837, gnl|bosTau2|chr5 (67177577-67177002)
               

               
               1246-1837, gnl|Hg17|chr22 (36527044-36527612)
               

               
               1246-1837, gnl|Mm7|chr15 (79112633-79113158)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

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               cst (0.700182)
               

               
               eru (0.60024)
               

               
               cje (0.495704)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               eye (0.341006)
               

               
               cli (0.305623)
               

               
               nmm (0.265604)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.700182)
               

               
               eru (0.60024)
               

               
               cje (0.495704)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               eye (0.341006)
               

               
               cli (0.305623)
               

               
               nmm (0.265604)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	157-276, - strand, RNAz p=0.549194
	1434-1588, + strand, RNAz p=0.999766

	1-1237, gnl\|bosTau2\|chr5 (67178848-67177615)
	1-1237, gnl\|Hg17\|chr22 (36525736-36527006)
	1-1237, gnl\|Mm7\|chr15 (79111402-79112604)

	1246-1837, gnl\|bosTau2\|chr5 (67177577-67177002)
	1246-1837, gnl\|Hg17\|chr22 (36527044-36527612)
	1246-1837, gnl\|Mm7\|chr15 (79112633-79113158)

	cst (0.700182)
	eru (0.60024)
	cje (0.495704)
	elu (0.385356)
	nlu (0.383362)
	duo (0.345602)
	ecc (0.345105)
	eye (0.341006)
	cli (0.305623)
	nmm (0.265604)
	eep (0.245128)
	ebs (0.236602)
	fli (0.202881)
	col (0.195008)
	cmu (0.186393)
	nep (0.183925)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	fhi (0.169578)
	nco (0.161734)
	eli (0.151814)
	lnt (0.142308)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	ute (0.132784)
	ese (0.126502)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)