Non-Coding RNA Search

Ss1.1-Pig3-SRG8006F11.3

Sequence:


               
               CCCACCCTGCTAGCTTGATGGCATGCCTGGTATGTCCCTTAAGAGACGTCTTCCCACCCA
TCACCCCACTGCCCTTAGCCCAAGCCGCCCTTGGCCACCAGTCTTCTGGACCAAGTCTCC
CGTGTCAGTGATACTGCACTTGGCCAAGAGACATTTCGGGCAACCCAGCACCCATCCTCC
CACCCTCCCTGTCCCCAGGGCCTCCAGCTGACAGATGGGGCCTTGCATTGAGTTTGAGAA
ATGTTTACTGTCTTTGAATTTGGGGATAGTTACTGGTCACAGTGGGGGCAGGTTCCCGCC
TCCAAGGTGTCAGCTGTCTGGAGCCAGCAGCCTTGGGGTGACAGCCCTTGCAGCACAGGT
CAGAGAACTTCCTAGAAACCAGCAGCACTTCTGTCCAAGAGCGAGGCAGGGCCTAGGCAG
GAGGTGGGACTTGTCCTGCCCGTTTGAATCCAGCCACCCACCAACTTTGGGGAAATGACT
TGGCTTGGTGGCCTGTGCTCCCTGGTGGGTGGCCACGCAGGCGGTGTGCTCTCCAGGTGC
CCACTTGGCCCTCACACCCTTGGTCTACCCTGGCGTGTGGAACAAAGTCATGGACTTCAC
CAAGGCCGCCTTGGGGCGGGAGGACGCTCTGAGCTTTTTGCCAGGCCCGGATGGTGGTTG
GCTCCCAGCGTGTCTGGAGAAATCACACAGTTCCAATGAATTTTGTGCTTCGGCCGGGGG
GGATTATTTAGAATAAGTAACAATGAATTTTTCTTGAATGTGGCCCCCAGGTAATGAATG
GGATTTTGAGCTTCTTATACAATAAGTAAAATCAAATTTATACCACTTGAGGCCGAGATT
CTTTCTGAAAGAAGTGTGGCAAAAGGCACTTTAATTTAATGCTGCTAACTTCGTTCTCTG
TTTCATTTGCTGGAGTGCGAGACAGTGAGTGTTTTCTCTGATGTATTTAAGGTGATATAT
ATGCCTGAATTACTCCTGTATCATTGCTGATAATACTGGACACTAAAATAAAGCCTAGTT
GGAAAGCGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCCTGCTAGCTTGATGGCATGCCTGGTATGTCCCTTAAGAGACGTCTTCCCACCCA
TCACCCCACTGCCCTTAGCCCAAGCCGCCCTTGGCCACCAGTCTTCTGGACCAAGTCTCC
CGTGTCAGTGATACTGCACTTGGCCAAGAGACATTTCGGGCAACCCAGCACCCATCCTCC
CACCCTCCCTGTCCCCAGGGCCTCCAGCTGACAGATGGGGCCTTGCATTGAGTTTGAGAA
ATGTTTACTGTCTTTGAATTTGGGGATAGTTACTGGTCACAGTGGGGGCAGGTTCCCGCC
TCCAAGGTGTCAGCTGTCTGGAGCCAGCAGCCTTGGGGTGACAGCCCTTGCAGCACAGGT
CAGAGAACTTCCTAGAAACCAGCAGCACTTCTGTCCAAGAGCGAGGCAGGGCCTAGGCAG
GAGGTGGGACTTGTCCTGCCCGTTTGAATCCAGCCACCCACCAACTTTGGGGAAATGACT
TGGCTTGGTGGCCTGTGCTCCCTGGTGGGTGGCCACGCAGGCGGTGTGCTCTCCAGGTGC
CCACTTGGCCCTCACACCCTTGGTCTACCCTGGCGTGTGGAACAAAGTCATGGACTTCAC
CAAGGCCGCCTTGGGGCGGGAGGACGCTCTGAGCTTTTTGCCAGGCCCGGATGGTGGTTG
GCTCCCAGCGTGTCTGGAGAAATCACACAGTTCCAATGAATTTTGTGCTTCGGCCGGGGG
GGATTATTTAGAATAAGTAACAATGAATTTTTCTTGAATGTGGCCCCCAGGTAATGAATG
GGATTTTGAGCTTCTTATACAATAAGTAAAATCAAATTTATACCACTTGAGGCCGAGATT
CTTTCTGAAAGAAGTGTGGCAAAAGGCACTTTAATTTAATGCTGCTAACTTCGTTCTCTG
TTTCATTTGCTGGAGTGCGAGACAGTGAGTGTTTTCTCTGATGTATTTAAGGTGATATAT
ATGCCTGAATTACTCCTGTATCATTGCTGATAATACTGGACACTAAAATAAAGCCTAGTT
GGAAAGCGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               34-152, - strand, RNAz p=0.967779
               

               
               232-351, + strand, RNAz p=0.604287

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               34-152, - strand, RNAz p=0.967779
               

               
               232-351, + strand, RNAz p=0.604287

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014874, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014874, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               34-1025, gnl|bosTau2|chr16 (21325782-21324802)
               

               
               34-1025, gnl|Hg17|chr1 (12006892-12007828)
               

               
               34-1025, gnl|Mm7|chr4 (146864051-146863146)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-1025, gnl|bosTau2|chr16 (21325782-21324802)
               

               
               34-1025, gnl|Hg17|chr1 (12006892-12007828)
               

               
               34-1025, gnl|Mm7|chr4 (146864051-146863146)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               ssp (0.677599)
               

               
               sme (0.610874)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.677599)
               

               
               sme (0.610874)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	34-152, - strand, RNAz p=0.967779
	232-351, + strand, RNAz p=0.604287

	34-1025, gnl\|bosTau2\|chr16 (21325782-21324802)
	34-1025, gnl\|Hg17\|chr1 (12006892-12007828)
	34-1025, gnl\|Mm7\|chr4 (146864051-146863146)

	ssp (0.677599)
	sme (0.610874)
	amn (0.417711)
	hea (0.408998)
	isp (0.300752)
	ldo (0.291008)
	cst (0.280073)
	fce (0.271592)
	cov (0.264306)
	cbe (0.239234)
	ebs (0.236602)
	spc (0.226732)
	nms (0.213858)
	fcc (0.197785)
	ill (0.175593)
	sin (0.174948)
	duo (0.172801)
	cki (0.165235)
	bfe (0.149858)
	hyp (0.142837)
	csk (0.140746)
	che (0.136314)
	ste (0.135208)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	cbr (0.127975)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	nbm (0.0993246)
	jej (0.0989218)