Non-Coding RNA Search

Ss1.1-Pig3-SRG8006G01.5

Sequence:


               
               TTTTCTCTCTCTCTCTCTCCCCTTTTCTCTTCCTTCCATCTTTCTTTCCACACGTCCTTT
CCTCATTGGCTCTTTTGCCTCCTACTTTTTCACTCCCTATCAGGGATAATTTAGGGGGAT
GGTAAAGGGTTGGCTAAGGAACAGACCCTGGGATTGGGGCTCTTAAGGGCTCTAACAGAG
TCTGCCTTATCCTCTTATGGGAAGGGAGACCCTAAAAAACATCTCTTCCTCCTCCTCTTC
TCCCCCTTTATGTGATCTCCCCAACAGAACCAGATTGTCGGGGAGGGGCATCGTGGGTTG
ACTGTTCCTCCCTGACGATGTAGCAATAAACAGATGCTGCCGAGGGCAGAGGATCGGGGA
GTCAGCTGGGAGGAGAGTGGTCTCTGGAGAAGGGGAGAGGCTTCTTGAGAGCACCCCAGG
GAATTGGCTCCTGTTTCAGAATGGCAGCAGAGCTGAGATTAATAACCGGGGTTCCCCTCA
GTGACTCTGGTTATTGAGCCCCTTCCTGTTAGACCTGCCCTCACCCCACCTCTTCTGCGT
CTGCTGTGTTTTTGGTGACACCTCATAAGGACTAGTCCCTTCTGCGATATCAGAGCCTTA
GGGTGCCCCGTCCCCTCCCCCAGTCAGTTTTGGCACCTGTAACCTCCTGGAACATGAAGG
ACTATGCTCTGAGGCCAGACTCCGAGCCCATGAGAGCAGAGACTGGACGGGCAAGACCAG
GTGCTAAGGAGGGGAGAGCAGGGCTCTCTGTCTCTCTCCAGACCATCACTGCACTTTAAC
CAGGGTCTTAGGTACAAAATCCTACTTTTCAGAGCCTTCCAGCTCTGGAACCTCAGACAT
CCTCATGCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCTCTCTCTCTCTCTCCCCTTTTCTCTTCCTTCCATCTTTCTTTCCACACGTCCTTT
CCTCATTGGCTCTTTTGCCTCCTACTTTTTCACTCCCTATCAGGGATAATTTAGGGGGAT
GGTAAAGGGTTGGCTAAGGAACAGACCCTGGGATTGGGGCTCTTAAGGGCTCTAACAGAG
TCTGCCTTATCCTCTTATGGGAAGGGAGACCCTAAAAAACATCTCTTCCTCCTCCTCTTC
TCCCCCTTTATGTGATCTCCCCAACAGAACCAGATTGTCGGGGAGGGGCATCGTGGGTTG
ACTGTTCCTCCCTGACGATGTAGCAATAAACAGATGCTGCCGAGGGCAGAGGATCGGGGA
GTCAGCTGGGAGGAGAGTGGTCTCTGGAGAAGGGGAGAGGCTTCTTGAGAGCACCCCAGG
GAATTGGCTCCTGTTTCAGAATGGCAGCAGAGCTGAGATTAATAACCGGGGTTCCCCTCA
GTGACTCTGGTTATTGAGCCCCTTCCTGTTAGACCTGCCCTCACCCCACCTCTTCTGCGT
CTGCTGTGTTTTTGGTGACACCTCATAAGGACTAGTCCCTTCTGCGATATCAGAGCCTTA
GGGTGCCCCGTCCCCTCCCCCAGTCAGTTTTGGCACCTGTAACCTCCTGGAACATGAAGG
ACTATGCTCTGAGGCCAGACTCCGAGCCCATGAGAGCAGAGACTGGACGGGCAAGACCAG
GTGCTAAGGAGGGGAGAGCAGGGCTCTCTGTCTCTCTCCAGACCATCACTGCACTTTAAC
CAGGGTCTTAGGTACAAAATCCTACTTTTCAGAGCCTTCCAGCTCTGGAACCTCAGACAT
CCTCATGCTCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               43-852, - strand, RNAz p=0.998961

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-852, - strand, RNAz p=0.998961

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               281-330, + strand, RNAmicro p=0.98343

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               281-330, + strand, RNAmicro p=0.98343

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-852, gnl|bosTau2|chr5 (33586019-33585177)
               

               
               4-852, gnl|Hg17|chr12 (54717025-54717869)
               

               
               4-852, gnl|Mm7|chr10 (128134153-128133334)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-852, gnl|bosTau2|chr5 (33586019-33585177)
               

               
               4-852, gnl|Hg17|chr12 (54717025-54717869)
               

               
               4-852, gnl|Mm7|chr10 (128134153-128133334)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               col (0.195008)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

	4-852, gnl\|bosTau2\|chr5 (33586019-33585177)
	4-852, gnl\|Hg17\|chr12 (54717025-54717869)
	4-852, gnl\|Mm7\|chr10 (128134153-128133334)