Non-Coding RNA Search

Ss1.1-Pig3-SRG8006H09.3

Sequence:


               
               GCTACACTCTGTGTCACTGTGTGTGTTCTTCAGACTTGAGGACAGACACCTTCATTGTAA
CGCTGTATCTCCTCCCTTTTTTGTACACAGTAAGTTTTCGTACACATTCCAGTTCCTTTT
GATGAGAAAAGATCACTGCTTTTGAAGAAGCTTTTTTTATTGTTTTAAAAAAAAAACTGC
AGGAGATTAAAGACCTAACAATTATTGCAGACTTTTTTTTTTTTTGCACTTGAGTTTTTG
AACCTATTGACCTTAAAATGAATTACTTTTTATAAAGTCAGATGCTTAATGGCTTTAATC
CATGGTGTCTTTTTAAAAGACATGAGTATGGCACATTTTCAAATACTGACAAAGACATTA
TTATTTAGTATATAAGTTGCTTGGGATGACTTCATTGACGTTTATGGGGGTGGGTTGAAC
CCATAATTGTTTAATGAATCTTTCAGTCTCAGCCTCCGTCCACAAAGTCTGTTGAGTCAT
ACTGGGCAGCCTCTAAAAGAGAGTAATGGCTGTATTTTCCTAATGTACAGAAAACAGATA
CAAATTCATAGCTGGATCTTTCTCAATTTTATTCTTTTCCCATAAATCCTTTTTTTTTTT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------CTGAGCAAGGCC
AGGGATTGAGCCTGTAACCTCATGGTTCCTAGTCAGATTTGTTTCCGCCACGCCACGATG
TTTTCTCCTCATAAATGCTTTTGAATGTCAGCACCTTCTACTGATGGTATATATATATAG
AGAGAGAGTCCAAGATGGTGCCTCATTTAAGAAAATTATCTCCCAGTAGGTATTTCAATA
TGCCTTTCTCAAGGTGTCCTTAGAGTACTGTCACTCCAGGTCACCTACTGCCTGGACAAA
TTTCAGAGCCCCTGTTCTGAAGAGGGGGAGATATTATCCCCAACTCACTTGAAGCTCAGG
CATGAGAGCAGATTTGTAGAGGTTATCATGTCAGGGAATGGGCTTCCTTGTCAGAGATGG
CAAAGGTCTCTAGTCCTGGAACCAAAAGGCTTTGAACATTGAGCTATTTCTTTTTTTTCT
TTCTCAGTTTAATGCTATAATTCTTGTGATAGCAAAACCTGACTTGAACTTACATGAGAC
TATTATAACTATTTATGCCACTCCGTAGGCTGTTCATTGATTTTGTCTGAAGAAATACCG
ATGGGCTTGATTACAGGGATTTTCCCAGACTCTGTGGAGATGTCTCGTAATATCTAGTAT
ATGCCCCATATTACTTTTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTACACTCTGTGTCACTGTGTGTGTTCTTCAGACTTGAGGACAGACACCTTCATTGTAA
CGCTGTATCTCCTCCCTTTTTTGTACACAGTAAGTTTTCGTACACATTCCAGTTCCTTTT
GATGAGAAAAGATCACTGCTTTTGAAGAAGCTTTTTTTATTGTTTTAAAAAAAAAACTGC
AGGAGATTAAAGACCTAACAATTATTGCAGACTTTTTTTTTTTTTGCACTTGAGTTTTTG
AACCTATTGACCTTAAAATGAATTACTTTTTATAAAGTCAGATGCTTAATGGCTTTAATC
CATGGTGTCTTTTTAAAAGACATGAGTATGGCACATTTTCAAATACTGACAAAGACATTA
TTATTTAGTATATAAGTTGCTTGGGATGACTTCATTGACGTTTATGGGGGTGGGTTGAAC
CCATAATTGTTTAATGAATCTTTCAGTCTCAGCCTCCGTCCACAAAGTCTGTTGAGTCAT
ACTGGGCAGCCTCTAAAAGAGAGTAATGGCTGTATTTTCCTAATGTACAGAAAACAGATA
CAAATTCATAGCTGGATCTTTCTCAATTTTATTCTTTTCCCATAAATCCTTTTTTTTTTT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------CTGAGCAAGGCC
AGGGATTGAGCCTGTAACCTCATGGTTCCTAGTCAGATTTGTTTCCGCCACGCCACGATG
TTTTCTCCTCATAAATGCTTTTGAATGTCAGCACCTTCTACTGATGGTATATATATATAG
AGAGAGAGTCCAAGATGGTGCCTCATTTAAGAAAATTATCTCCCAGTAGGTATTTCAATA
TGCCTTTCTCAAGGTGTCCTTAGAGTACTGTCACTCCAGGTCACCTACTGCCTGGACAAA
TTTCAGAGCCCCTGTTCTGAAGAGGGGGAGATATTATCCCCAACTCACTTGAAGCTCAGG
CATGAGAGCAGATTTGTAGAGGTTATCATGTCAGGGAATGGGCTTCCTTGTCAGAGATGG
CAAAGGTCTCTAGTCCTGGAACCAAAAGGCTTTGAACATTGAGCTATTTCTTTTTTTTCT
TTCTCAGTTTAATGCTATAATTCTTGTGATAGCAAAACCTGACTTGAACTTACATGAGAC
TATTATAACTATTTATGCCACTCCGTAGGCTGTTCATTGATTTTGTCTGAAGAAATACCG
ATGGGCTTGATTACAGGGATTTTCCCAGACTCTGTGGAGATGTCTCGTAATATCTAGTAT
ATGCCCCATATTACTTTTCAAAAA

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               220-594, gnl|bosTau2|chr24 (44834825-44834441)
               

               
               220-594, gnl|Hg17|chr18 (59148393-59148017)
               

               
               220-594, gnl|Mm7|chr1 (106622965-106622639)
               


               
               673-951, gnl|bosTau2|chr24 (44834463-44834189)
               

               
               673-951, gnl|Hg17|chr18 (59148039-59147750)
               

               
               673-951, gnl|Mm7|chr1 (106622658-106622416)
               


               
               961-1235, gnl|bosTau2|chr24 (44834157-44833891)
               

               
               961-1235, gnl|Hg17|chr18 (59147740-59147471)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-594, gnl|bosTau2|chr24 (44834825-44834441)
               

               
               220-594, gnl|Hg17|chr18 (59148393-59148017)
               

               
               220-594, gnl|Mm7|chr1 (106622965-106622639)
               


               
               673-951, gnl|bosTau2|chr24 (44834463-44834189)
               

               
               673-951, gnl|Hg17|chr18 (59148039-59147750)
               

               
               673-951, gnl|Mm7|chr1 (106622658-106622416)
               


               
               961-1235, gnl|bosTau2|chr24 (44834157-44833891)
               

               
               961-1235, gnl|Hg17|chr18 (59147740-59147471)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               sin (0.174948)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               fhi (0.169578)

	220-594, gnl\|bosTau2\|chr24 (44834825-44834441)
	220-594, gnl\|Hg17\|chr18 (59148393-59148017)
	220-594, gnl\|Mm7\|chr1 (106622965-106622639)

	673-951, gnl\|bosTau2\|chr24 (44834463-44834189)
	673-951, gnl\|Hg17\|chr18 (59148039-59147750)
	673-951, gnl\|Mm7\|chr1 (106622658-106622416)

	961-1235, gnl\|bosTau2\|chr24 (44834157-44833891)
	961-1235, gnl\|Hg17\|chr18 (59147740-59147471)