Non-Coding RNA Search

Ss1.1-Pig3-SRG8006H15.5

Sequence:


               
               CCTTGTATAGATCTGGAGGAAAGAAAACTACGCAAAACTTTTTAAAAGTTCTAGTGATAC
GGTAGGAGCTTTGCAGAAAGTTTGCAAAAGTCTTTACCAATAATATTTAGAGCTAGTCTC
CAAGCGACGAAAAAAAATGTTTTAATATTTGCAAGCAACTTTTGTACAGTATTTATCGAG
ATAAACATGGCAATCAAAATGTCCATTGTTTATAAGCTGAGAATTTGCCAATATTTTTCA
AGGAGAGGCTTCTTGCTGAATTTTGATTCTGCAGCTGAAATTTAGGCCAGTTGCAAATGT
GCAAAGAAGAAAATTATTCAGATTTGGACATTTTAATTGTTTAAAAATTGTACAAAAGGA
AAAAACTAGAATAAGTACGGGCAAAACCATCTCCATGGTATTCTTTAAAGGGGCAAAAGT
TTAGATTGTACTAAATTTTTTAAACTTACTGTTAAAAGCAAAAATGGCCATGAGCAGGTT
GACATCGTTGGTAATTTATAATAGCTTTTGTTTCCCAACTTTACATTTTGTTCAGATAAA
AAGCAACATGAAATTACTGTGTTTGAAATATTTTCTTATGGTTTGTAATATTTCTGTAAA
TTTATTGTGATATTTTAAGGTTTTCCCCCTTTTATTTTCCGTAGTTGTATTTTAAAGATT
CGGCTCTGTATTATTGAATCAGTCTGCCGAGAATCCATGTATATATTTGAACTAATACCA
TCCTTATAACAGGTACATTTTCAACTTAAGTTTTTACTCCATTATGCACAGTTTGAGATA
AATAAATTTTTGAAATATGGACACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGGGGGGGGGGCTTTTTAAAATTTTCCTGGGGGGGGCAAAATTTTCCCCCCCCCAT
TTTTTTTTAAAAAAGGGGCCCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGTATAGATCTGGAGGAAAGAAAACTACGCAAAACTTTTTAAAAGTTCTAGTGATAC
GGTAGGAGCTTTGCAGAAAGTTTGCAAAAGTCTTTACCAATAATATTTAGAGCTAGTCTC
CAAGCGACGAAAAAAAATGTTTTAATATTTGCAAGCAACTTTTGTACAGTATTTATCGAG
ATAAACATGGCAATCAAAATGTCCATTGTTTATAAGCTGAGAATTTGCCAATATTTTTCA
AGGAGAGGCTTCTTGCTGAATTTTGATTCTGCAGCTGAAATTTAGGCCAGTTGCAAATGT
GCAAAGAAGAAAATTATTCAGATTTGGACATTTTAATTGTTTAAAAATTGTACAAAAGGA
AAAAACTAGAATAAGTACGGGCAAAACCATCTCCATGGTATTCTTTAAAGGGGCAAAAGT
TTAGATTGTACTAAATTTTTTAAACTTACTGTTAAAAGCAAAAATGGCCATGAGCAGGTT
GACATCGTTGGTAATTTATAATAGCTTTTGTTTCCCAACTTTACATTTTGTTCAGATAAA
AAGCAACATGAAATTACTGTGTTTGAAATATTTTCTTATGGTTTGTAATATTTCTGTAAA
TTTATTGTGATATTTTAAGGTTTTCCCCCTTTTATTTTCCGTAGTTGTATTTTAAAGATT
CGGCTCTGTATTATTGAATCAGTCTGCCGAGAATCCATGTATATATTTGAACTAATACCA
TCCTTATAACAGGTACATTTTCAACTTAAGTTTTTACTCCATTATGCACAGTTTGAGATA
AATAAATTTTTGAAATATGGACACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGGGGGGGGGGCTTTTTAAAATTTTCCTGGGGGGGGCAAAATTTTCCCCCCCCCAT
TTTTTTTTAAAAAAGGGGCCCCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-317, + strand, RNAz p=0.783723

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, + strand, RNAz p=0.783723

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003106, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003106, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-809, gnl|bosTau2|chr1 (55838669-55839475)
               

               
               1-809, gnl|Hg17|chr3 (182914116-182914926)
               

               
               1-809, gnl|Mm7|chr3 (34459044-34459841)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-809, gnl|bosTau2|chr1 (55838669-55839475)
               

               
               1-809, gnl|Hg17|chr3 (182914116-182914926)
               

               
               1-809, gnl|Mm7|chr3 (34459044-34459841)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               ebs (0.118301)

	1-809, gnl\|bosTau2\|chr1 (55838669-55839475)
	1-809, gnl\|Hg17\|chr3 (182914116-182914926)
	1-809, gnl\|Mm7\|chr3 (34459044-34459841)

	cbe (0.239234)
	ece (0.229305)
	nlu (0.191681)
	eye (0.170503)
	ebs (0.118301)