Non-Coding RNA Search

Ss1.1-Pig3-SRG8006H17.3.5

Sequence:


               
               GGTCCCCACCACTGGCCCATGGGTGCTACCAGCTCATGCTGTACCAAGCAGGCCGGTGCC
AACCCAGCAACTGCCGCCGGTGCCATGGGGCCTATCGGGCACTGAGGGGACTGCGAAGCT
TTATGAGTGCCAACACCTTCGGCAATGCTGGCTTTTCTGTCCTCCTGCATGGGGCCCGGC
TTGAGGGCCGCTGTGGGCCCACCAATGCCCGGGTCAGATGCCATCTGGGCCTGAAGATTC
CCCCTGGCTGTGAGCTGGTGGTTGGGGGTGAGCCCCAGTGATGGGATGAGGGACACTGCA
TGATGGTGGACGACTCCTTCCTGCACACGGTGGCTCATAATGGCTCTCCGGAAGATGGGC
CTCGAGTGGTCTTCATCGTGGACCTCTGGCATCCCAATGTGGATGGGGCGGAACGCCAGG
CCCTTGACTTTGTCTTCGCACCAGACCCATGAGGGAAGGTGTTCCCCTTCAGACACATAG
ACTGGCGAGAGGCTGCACTCGGGGACGGCTTGAGTGGGAGCCAGGACCACCTCTCCATTG
CACGGGGTGGGGGTGGGGGGCTGAGGGTGGGAACTGGCCAGTGAACGCTGAAATACAGAT
TTTAAACCTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCCCACCACTGGCCCATGGGTGCTACCAGCTCATGCTGTACCAAGCAGGCCGGTGCC
AACCCAGCAACTGCCGCCGGTGCCATGGGGCCTATCGGGCACTGAGGGGACTGCGAAGCT
TTATGAGTGCCAACACCTTCGGCAATGCTGGCTTTTCTGTCCTCCTGCATGGGGCCCGGC
TTGAGGGCCGCTGTGGGCCCACCAATGCCCGGGTCAGATGCCATCTGGGCCTGAAGATTC
CCCCTGGCTGTGAGCTGGTGGTTGGGGGTGAGCCCCAGTGATGGGATGAGGGACACTGCA
TGATGGTGGACGACTCCTTCCTGCACACGGTGGCTCATAATGGCTCTCCGGAAGATGGGC
CTCGAGTGGTCTTCATCGTGGACCTCTGGCATCCCAATGTGGATGGGGCGGAACGCCAGG
CCCTTGACTTTGTCTTCGCACCAGACCCATGAGGGAAGGTGTTCCCCTTCAGACACATAG
ACTGGCGAGAGGCTGCACTCGGGGACGGCTTGAGTGGGAGCCAGGACCACCTCTCCATTG
CACGGGGTGGGGGTGGGGGGCTGAGGGTGGGAACTGGCCAGTGAACGCTGAAATACAGAT
TTTAAACCTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|20843669|ref|XP_133865.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|20843669|ref|XP_133865.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.930459

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.930459

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-229, gnl|bosTau2|chr25 (24614710-24614938)
               

               
               1-229, gnl|Hg17|chr16 (29820515-29820743)
               

               
               1-229, gnl|Mm7|chr7 (123045056-123044828)
               


               
               342-615, gnl|bosTau2|chr25 (24617400-24617669)
               

               
               342-615, gnl|Hg17|chr16 (29824609-29824876)
               

               
               342-615, gnl|Mm7|chr7 (123042769-123042541)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-229, gnl|bosTau2|chr25 (24614710-24614938)
               

               
               1-229, gnl|Hg17|chr16 (29820515-29820743)
               

               
               1-229, gnl|Mm7|chr7 (123045056-123044828)
               


               
               342-615, gnl|bosTau2|chr25 (24617400-24617669)
               

               
               342-615, gnl|Hg17|chr16 (29824609-29824876)
               

               
               342-615, gnl|Mm7|chr7 (123042769-123042541)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)

	1-229, gnl\|bosTau2\|chr25 (24614710-24614938)
	1-229, gnl\|Hg17\|chr16 (29820515-29820743)
	1-229, gnl\|Mm7\|chr7 (123045056-123044828)

	342-615, gnl\|bosTau2\|chr25 (24617400-24617669)
	342-615, gnl\|Hg17\|chr16 (29824609-29824876)
	342-615, gnl\|Mm7\|chr7 (123042769-123042541)