Non-Coding RNA Search

Ss1.1-Pig3-SRG8006I12.3

Sequence:


               
               CGCGTATTGACATGCTCAATTCCAAAGACAATGGTGCAGGTGACCTCTTCCATCTTGAGC
CAGGAGAAGGTTGAGGCCTGAGGGCAGACCTAGCATCTTCCCTTTGCCTCCACAGCCCCA
GAGATGGCACTTCCCCTGCTACCCCATCTGGTCAGACCCACAACTGCCCAGTGTACATTC
ATTGATGCTTATACCAAATAGGGCATGTGTGGCTGGCAGCTGGCAGGGACAGCCCCGTCC
CTGTGTTGGAGTTGGCAGAGAGAAGCAGCAATAAGCATTTAGGTGAATGGCTGAAAGTGC
TGTTTGGCTAAGAGGCCTTCAGTCCACTTTCACAACTTTCCAAGTTCCTGATGAGGCTAC
AAAAGCTCCATAAAAGAAAACCAGTAATGTAAATAAATCAAAAACTAAGCTTCCAAGCGT
AGTTTTTAAAGGGGGATGATGAAATGATGAATGTGAAACCACCCACAGGATGCGGTAGAG
TCGGTTTTTCTGTGCTTTGTCATTTTACTCTGATAGGAACTTTTGTTACTTAACTCTGTG
CATAACTTATTTAATGTACTGTATAAATGAACCAAAACTGTTAAATATGTATTTAGTTTG
TTCTACTTAAAGTAGTCAATAAAAAGGCTATATTCCTTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGTATTGACATGCTCAATTCCAAAGACAATGGTGCAGGTGACCTCTTCCATCTTGAGC
CAGGAGAAGGTTGAGGCCTGAGGGCAGACCTAGCATCTTCCCTTTGCCTCCACAGCCCCA
GAGATGGCACTTCCCCTGCTACCCCATCTGGTCAGACCCACAACTGCCCAGTGTACATTC
ATTGATGCTTATACCAAATAGGGCATGTGTGGCTGGCAGCTGGCAGGGACAGCCCCGTCC
CTGTGTTGGAGTTGGCAGAGAGAAGCAGCAATAAGCATTTAGGTGAATGGCTGAAAGTGC
TGTTTGGCTAAGAGGCCTTCAGTCCACTTTCACAACTTTCCAAGTTCCTGATGAGGCTAC
AAAAGCTCCATAAAAGAAAACCAGTAATGTAAATAAATCAAAAACTAAGCTTCCAAGCGT
AGTTTTTAAAGGGGGATGATGAAATGATGAATGTGAAACCACCCACAGGATGCGGTAGAG
TCGGTTTTTCTGTGCTTTGTCATTTTACTCTGATAGGAACTTTTGTTACTTAACTCTGTG
CATAACTTATTTAATGTACTGTATAAATGAACCAAAACTGTTAAATATGTATTTAGTTTG
TTCTACTTAAAGTAGTCAATAAAAAGGCTATATTCCTTAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-234, - strand, RNAz p=0.508301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-234, - strand, RNAz p=0.508301

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               77-188, - strand, RNAmicro p=0.965679

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               77-188, - strand, RNAmicro p=0.965679

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-638, gnl|bosTau2|chr13 (48322270-48321636)
               

               
               1-638, gnl|Hg17|chr20 (31700862-31701498)
               

               
               1-638, gnl|Mm7|chr2 (154279599-154280203)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-638, gnl|bosTau2|chr13 (48322270-48321636)
               

               
               1-638, gnl|Hg17|chr20 (31700862-31701498)
               

               
               1-638, gnl|Mm7|chr2 (154279599-154280203)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.341006)
               

               
               tbr (0.154178)
               

               
               cbr (0.127975)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               tbr (0.154178)
               

               
               cbr (0.127975)
               

               
               spc (0.113366)

	1-638, gnl\|bosTau2\|chr13 (48322270-48321636)
	1-638, gnl\|Hg17\|chr20 (31700862-31701498)
	1-638, gnl\|Mm7\|chr2 (154279599-154280203)