Ss1.1-Pig3-SRG8006I13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCAGTGGATGGTTTCCGTGCATCATACATGAAGAAAGGCAGCAAGGTCATGCCTAACA TTGAAAAACTAAGGTCTTGTGGCACCCACTCCCCCTACATGAGGCCAGTGTACCCGACAA AAACCTTCCCTAACTTATACACTTTGGCCACTGGGCTGTATCCAGAATCACATGGAATTG TTGGCAATTCAATGTATGATCCTGTATTTGATGCCACTTTCCATCTGCGAGGGCGAGAGA AATTCAATCATAGATGGTGGGGAGGTCAACCGCTGTGGATTACAGCCACCAAGCAAGGGG TGAAAGCTGGGACATTCTTCTGGTCTGTGGTCATCCCTCACGAGCGGAGGATATTAACCA TCCTGCAGTGGCTCACCCTGCCAGACAACGAAAGGCCTTCAGTCTATGCCTTCTATTCCG AACAACCTGATTTCTCTGGACACAAATATGGCCCTTTTGGCCCTGAGATGACAAATCCTC TGAGGGAAATTGACAAAACAGTGGGGCAATTAATGGATGGGCTGAAACAACTAAAGCTGC ATCGCTGTGTAAATGTCATCTTTGTTGGAGACCATGGAATGGAAGATGTCACATGTGATA GAACTGAATTCTTGAGCAATTACCTGACTAATGTGGATGACATTACCCTAGTGCCTGGAA CACTAGGAAGAATTCGACCCAAATTTAGTAATAATGCTAAATATGACCCTAAAGTTATTA TGGCTAATCTCACGTGTAAGAAACCCGATCAGCACTTTAAGCCTTACATGAAACAGCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCAGTGGATGGTTTCCGTGCATCATACATGAAGAAAGGCAGCAAGGTCATGCCTAACA TTGAAAAACTAAGGTCTTGTGGCACCCACTCCCCCTACATGAGGCCAGTGTACCCGACAA AAACCTTCCCTAACTTATACACTTTGGCCACTGGGCTGTATCCAGAATCACATGGAATTG TTGGCAATTCAATGTATGATCCTGTATTTGATGCCACTTTCCATCTGCGAGGGCGAGAGA AATTCAATCATAGATGGTGGGGAGGTCAACCGCTGTGGATTACAGCCACCAAGCAAGGGG TGAAAGCTGGGACATTCTTCTGGTCTGTGGTCATCCCTCACGAGCGGAGGATATTAACCA TCCTGCAGTGGCTCACCCTGCCAGACAACGAAAGGCCTTCAGTCTATGCCTTCTATTCCG AACAACCTGATTTCTCTGGACACAAATATGGCCCTTTTGGCCCTGAGATGACAAATCCTC TGAGGGAAATTGACAAAACAGTGGGGCAATTAATGGATGGGCTGAAACAACTAAAGCTGC ATCGCTGTGTAAATGTCATCTTTGTTGGAGACCATGGAATGGAAGATGTCACATGTGATA GAACTGAATTCTTGAGCAATTACCTGACTAATGTGGATGACATTACCCTAGTGCCTGGAA CACTAGGAAGAATTCGACCCAAATTTAGTAATAATGCTAAATATGACCCTAAAGTTATTA TGGCTAATCTCACGTGTAAGAAACCCGATCAGCACTTTAAGCCTTACATGAAACAGCACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 153-271, no strand, RNAz p=0.86807 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 153-271, no strand, RNAz p=0.86807 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 153-284, gnl|bosTau2|chr14 (49683975-49684106) | |
| 153-284, gnl|Hg17|chr8 (120697805-120697674) | |
| 153-284, gnl|Mm7|chr15 (54957920-54957789) | |
| 572-702, gnl|bosTau2|chr14 (49709813-49709944) | |
| 572-702, gnl|canFam2|chr13 (21654704-21654857) | |
| 572-702, gnl|danRer3|chrUn (118610882-118610738) | |
| 572-702, gnl|dasNov1|scaffold_843 (112849-112695) | |
| 572-702, gnl|fr1|chrUn (233209760-233209898) | |
| 572-702, gnl|galGal2|chr2 (147302198-147302042) | |
| 572-702, gnl|hg17|chr8 (120671916-120672072) | |
| 572-702, gnl|Hg17|chr8 (120672057-120671926) | |
| 572-702, gnl|loxAfr1|scaffold_139451 (4104-3943) | |
| 572-702, gnl|mm7|chr15 (54930313-54930477) | |
| 572-702, gnl|Mm7|chr15 (54930454-54930323) | |
| 572-702, gnl|monDom2|scaffold_3 (36284127-36283970) | |
| 572-702, gnl|oryCun1|scaffold_213739 (80733-80888) | |
| 572-702, gnl|panTro1|chr7 (123295791-123295947) | |
| 572-702, gnl|rheMac2|chr8 (122081886-122082043) | |
| 572-702, gnl|rn3|chr7 (91363064-91363233) | |
| 572-702, gnl|tetNig1|chrUn_random (10142480-10142589) | |
| 572-702, gnl|xenTro1|scaffold_330 (858205-858061) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-284, gnl|bosTau2|chr14 (49683975-49684106) | |
| 153-284, gnl|Hg17|chr8 (120697805-120697674) | |
| 153-284, gnl|Mm7|chr15 (54957920-54957789) | |
| 572-702, gnl|bosTau2|chr14 (49709813-49709944) | |
| 572-702, gnl|canFam2|chr13 (21654704-21654857) | |
| 572-702, gnl|danRer3|chrUn (118610882-118610738) | |
| 572-702, gnl|dasNov1|scaffold_843 (112849-112695) | |
| 572-702, gnl|fr1|chrUn (233209760-233209898) | |
| 572-702, gnl|galGal2|chr2 (147302198-147302042) | |
| 572-702, gnl|hg17|chr8 (120671916-120672072) | |
| 572-702, gnl|Hg17|chr8 (120672057-120671926) | |
| 572-702, gnl|loxAfr1|scaffold_139451 (4104-3943) | |
| 572-702, gnl|mm7|chr15 (54930313-54930477) | |
| 572-702, gnl|Mm7|chr15 (54930454-54930323) | |
| 572-702, gnl|monDom2|scaffold_3 (36284127-36283970) | |
| 572-702, gnl|oryCun1|scaffold_213739 (80733-80888) | |
| 572-702, gnl|panTro1|chr7 (123295791-123295947) | |
| 572-702, gnl|rheMac2|chr8 (122081886-122082043) | |
| 572-702, gnl|rn3|chr7 (91363064-91363233) | |
| 572-702, gnl|tetNig1|chrUn_random (10142480-10142589) | |
| 572-702, gnl|xenTro1|scaffold_330 (858205-858061) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |