Ss1.1-Pig3-SRG8006K19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATGGCTCGCGGGACAACATGGCTGCGCCCGCGCTAGGGCCAGCTCAAGGAAGCTTCGC TGGACTCGGTCTCGTCCTTTTGCTGCCGCTGCTCTTGCTGCTGGGCGGAGTGGCAGGAGG CGAAGAAGCCGAGGCTGGGGCTGGTGCGGCGTCCCTCGCGGGCTCGTGCGGTTGTGGCGC TCCCCAGCGGCACGGGGCCTATGGCAGCTCAGCGGCCGCGCAGCAGTACTCGCGGGAGGC GAACGCCCCGGGCCCGGTCCCTAGAGAGCGGCAGTTCCCGCTCACGAAGATGGTCCCCAT CCCTGCCGGAGTCTTTACAATGGGCACAGATGATCCTCAGATAAAGCAGGATGGGGAAGC ACCTGCGAGGAGAGTTGCTATTGATGCCTTTTACATGGATGCCTATGAAGTCAGTAATGC TGAATTTGAGAAGTTTGTGAACTCAACTGGCTATTTGACAGAGGCTGAGAAGTTTGGTGA CTCCTTTGTCTTTGAAGGCATATTGAGTGACCAAGTGAAGTCTGATATCCAACAGGCAGT TGCAGCTGCTCCCTGGTGGTTACCTGTTAAAGGCGCTAACTGGAGACACCCAGAAGGGCC GGACTCTACTGTTGTACACAGGCCAGATCACCCAGTTCTCCACGTCTCCTGGAACGATGC CGTGGCGTACTGCACTTGGGCAGGGAAGCGGTTGCCCACGGAAGCTGAGTGGGAATATAG CTGTCGAGGAGGCCTGCAAAATAGACTTTTCCCCTGGGGCAACAAACTGCAGCCAAAAGG GCAACATTATGCCAACATTTGGCAGGGCGAGTTTCCTGTGACCAACACCGGAGAGGACGG CTTCCGAGGAACTGCGCCTGTTGATGCCTTTCCTCCCAATGGTTATGGCCTTTACAATAT AGTAGGGAACGCCTGGGAATGGACCTCAGACTGGTGGACCATTCACCATGCTGCTGAAGA AACAATTAACCCAAAAGGCCCCCCTTCTGGGAAAGACCGGGTGAAGAAAGGGGGATCCTA TATGTGCCATAAGTCCTACTGCTACAGGTACCGCTGTGCTGCTCGAAGCCAGAACACGCC GGACAGCTCGGCTTCAAATCTGGGGTTCCGCTGTGCAGCTGACCACCAGCCCACCACAGG CTGAGTCAGGAGGAGTCTTCCCGAATCCGAGAAGTCGTGTCTAATGTGCATGCGGCTTCC TTCAGAATGCTGACCCACCTCGTGGAAGAATTTCCACATCAGGTGGGCTACGTACCTGCC CGATGGCCAAAGGAACTGTGTTGTGAGACCAAATTGCCGCTGACCTGCATCAGCATGTGC GCTTTATTGTGTGATGTATTTTTGGAGCTCATTGCCATGTTTTATTTTTGAGAGTCTTTT AAAGAGGGAGGAGGTGGAGGGCACCCTGAGCTAGGTTTCAGTAGGCCTGTGTTCTACCAG GCTCTGCCCAGGGGATTAGACCCCAGGGTCCCACACTTGACCTTCCTGGGCCTCAGTGAC CTCATGGGTCCAGTGACAGGGTGCACAACATGGTCTCTGAGGCTCTCTCCCCACTCACAA ATTCTCTGAGTATATCAGATTCTATTGTGATTTCATAGTGAGAATTTATGACAGATTATT TTTTAGCAATTTTTTTCATGTGTGAAACTTGGGTGATACTAATCATGTAAATAATTGTTC TCTTATATATTATTTTCAGAAAAGGATGAGGGTGGTGGTAGTGATGATTCTTTATATTCA TACTGCACTTTGTTTTGTCAAGGAAATCAGTGTCTTTTACATGGTTATGATGCATCCCAC TTGGGCCAGCAATGTGCTCTCAAGTTCAGCAATCTGAACTCGCAGGAATGTCTGTGGGGT GACTCTACTGTGCTTTATTTTTAAAAATTAAGTGCCTTTGGTTCAGGGGGCAGTTATAAG CCCTATTTCCCCCTCTCCCCAAAGCCTTTGGTGAATGTGAAATCTGTGCCACATGGAGAA ACTTGTTTAATTCTAGATGTAGGAAAAAAGGAACAAGAACCTTGAATTGACTATATTCAA GGTATCCAGTATTTTGTAATAGAGAAGTAGGAAATCTTGTTGGCTGTGGAATATCAGATG CTTTGGATCATGCACTATGTTGAATAAACTGGTATCTGCTAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATGGCTCGCGGGACAACATGGCTGCGCCCGCGCTAGGGCCAGCTCAAGGAAGCTTCGC TGGACTCGGTCTCGTCCTTTTGCTGCCGCTGCTCTTGCTGCTGGGCGGAGTGGCAGGAGG CGAAGAAGCCGAGGCTGGGGCTGGTGCGGCGTCCCTCGCGGGCTCGTGCGGTTGTGGCGC TCCCCAGCGGCACGGGGCCTATGGCAGCTCAGCGGCCGCGCAGCAGTACTCGCGGGAGGC GAACGCCCCGGGCCCGGTCCCTAGAGAGCGGCAGTTCCCGCTCACGAAGATGGTCCCCAT CCCTGCCGGAGTCTTTACAATGGGCACAGATGATCCTCAGATAAAGCAGGATGGGGAAGC ACCTGCGAGGAGAGTTGCTATTGATGCCTTTTACATGGATGCCTATGAAGTCAGTAATGC TGAATTTGAGAAGTTTGTGAACTCAACTGGCTATTTGACAGAGGCTGAGAAGTTTGGTGA CTCCTTTGTCTTTGAAGGCATATTGAGTGACCAAGTGAAGTCTGATATCCAACAGGCAGT TGCAGCTGCTCCCTGGTGGTTACCTGTTAAAGGCGCTAACTGGAGACACCCAGAAGGGCC GGACTCTACTGTTGTACACAGGCCAGATCACCCAGTTCTCCACGTCTCCTGGAACGATGC CGTGGCGTACTGCACTTGGGCAGGGAAGCGGTTGCCCACGGAAGCTGAGTGGGAATATAG CTGTCGAGGAGGCCTGCAAAATAGACTTTTCCCCTGGGGCAACAAACTGCAGCCAAAAGG GCAACATTATGCCAACATTTGGCAGGGCGAGTTTCCTGTGACCAACACCGGAGAGGACGG CTTCCGAGGAACTGCGCCTGTTGATGCCTTTCCTCCCAATGGTTATGGCCTTTACAATAT AGTAGGGAACGCCTGGGAATGGACCTCAGACTGGTGGACCATTCACCATGCTGCTGAAGA AACAATTAACCCAAAAGGCCCCCCTTCTGGGAAAGACCGGGTGAAGAAAGGGGGATCCTA TATGTGCCATAAGTCCTACTGCTACAGGTACCGCTGTGCTGCTCGAAGCCAGAACACGCC GGACAGCTCGGCTTCAAATCTGGGGTTCCGCTGTGCAGCTGACCACCAGCCCACCACAGG CTGAGTCAGGAGGAGTCTTCCCGAATCCGAGAAGTCGTGTCTAATGTGCATGCGGCTTCC TTCAGAATGCTGACCCACCTCGTGGAAGAATTTCCACATCAGGTGGGCTACGTACCTGCC CGATGGCCAAAGGAACTGTGTTGTGAGACCAAATTGCCGCTGACCTGCATCAGCATGTGC GCTTTATTGTGTGATGTATTTTTGGAGCTCATTGCCATGTTTTATTTTTGAGAGTCTTTT AAAGAGGGAGGAGGTGGAGGGCACCCTGAGCTAGGTTTCAGTAGGCCTGTGTTCTACCAG GCTCTGCCCAGGGGATTAGACCCCAGGGTCCCACACTTGACCTTCCTGGGCCTCAGTGAC CTCATGGGTCCAGTGACAGGGTGCACAACATGGTCTCTGAGGCTCTCTCCCCACTCACAA ATTCTCTGAGTATATCAGATTCTATTGTGATTTCATAGTGAGAATTTATGACAGATTATT TTTTAGCAATTTTTTTCATGTGTGAAACTTGGGTGATACTAATCATGTAAATAATTGTTC TCTTATATATTATTTTCAGAAAAGGATGAGGGTGGTGGTAGTGATGATTCTTTATATTCA TACTGCACTTTGTTTTGTCAAGGAAATCAGTGTCTTTTACATGGTTATGATGCATCCCAC TTGGGCCAGCAATGTGCTCTCAAGTTCAGCAATCTGAACTCGCAGGAATGTCTGTGGGGT GACTCTACTGTGCTTTATTTTTAAAAATTAAGTGCCTTTGGTTCAGGGGGCAGTTATAAG CCCTATTTCCCCCTCTCCCCAAAGCCTTTGGTGAATGTGAAATCTGTGCCACATGGAGAA ACTTGTTTAATTCTAGATGTAGGAAAAAAGGAACAAGAACCTTGAATTGACTATATTCAA GGTATCCAGTATTTTGTAATAGAGAAGTAGGAAATCTTGTTGGCTGTGGAATATCAGATG CTTTGGATCATGCACTATGTTGAATAAACTGGTATCTGCTAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 740-861, + strand, RNAz p=0.964171 | |
| 1383-1500, - strand, RNAz p=0.868643 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 740-861, + strand, RNAz p=0.964171 | |
| 1383-1500, - strand, RNAz p=0.868643 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-295, gnl|bosTau2|chr22 (16680750-16680456) | |
| 1-295, gnl|Hg17|chr3 (4483948-4483654) | |
| 1-295, gnl|Mm7|chr6 (108279613-108279325) | |
| 740-861, gnl|bosTau2|chr22 (16640496-16640375) | |
| 740-861, gnl|canFam2|chr20 (16148658-16148514) | |
| 740-861, gnl|danRer3|chrNA (176376357-176376507) | |
| 740-861, gnl|dasNov1|scaffold_131134 (342-486) | |
| 740-861, gnl|echTel1|scaffold_319031 (154689-154826) | |
| 740-861, gnl|fr1|chrUn (146423148-146423285) | |
| 740-861, gnl|hg17|chr3 (4433807-4433951) | |
| 740-861, gnl|Hg17|chr3 (4433931-4433810) | |
| 740-861, gnl|loxAfr1|scaffold_2354 (1151-1295) | |
| 740-861, gnl|mm7|chr6 (108246260-108246404) | |
| 740-861, gnl|Mm7|chr6 (108246384-108246263) | |
| 740-861, gnl|monDom2|scaffold_5 (30031934-30032071) | |
| 740-861, gnl|oryCun1|scaffold_54086 (1816-1960) | |
| 740-861, gnl|panTro1|chr2 (4551505-4551649) | |
| 740-861, gnl|rheMac2|chr2 (56611087-56610943) | |
| 740-861, gnl|rn3|chr4 (143885627-143885771) | |
| 740-861, gnl|tetNig1|chr11 (6845099-6845236) | |
| 740-861, gnl|xenTro1|scaffold_173 (1687776-1687920) | |
| 1031-2143, gnl|bosTau2|chr22 (16590504-16589399) | |
| 1031-2143, gnl|Hg17|chr3 (4378941-4377835) | |
| 1031-2143, gnl|Mm7|chr6 (108202627-108201065) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-295, gnl|bosTau2|chr22 (16680750-16680456) | |
| 1-295, gnl|Hg17|chr3 (4483948-4483654) | |
| 1-295, gnl|Mm7|chr6 (108279613-108279325) | |
| 740-861, gnl|bosTau2|chr22 (16640496-16640375) | |
| 740-861, gnl|canFam2|chr20 (16148658-16148514) | |
| 740-861, gnl|danRer3|chrNA (176376357-176376507) | |
| 740-861, gnl|dasNov1|scaffold_131134 (342-486) | |
| 740-861, gnl|echTel1|scaffold_319031 (154689-154826) | |
| 740-861, gnl|fr1|chrUn (146423148-146423285) | |
| 740-861, gnl|hg17|chr3 (4433807-4433951) | |
| 740-861, gnl|Hg17|chr3 (4433931-4433810) | |
| 740-861, gnl|loxAfr1|scaffold_2354 (1151-1295) | |
| 740-861, gnl|mm7|chr6 (108246260-108246404) | |
| 740-861, gnl|Mm7|chr6 (108246384-108246263) | |
| 740-861, gnl|monDom2|scaffold_5 (30031934-30032071) | |
| 740-861, gnl|oryCun1|scaffold_54086 (1816-1960) | |
| 740-861, gnl|panTro1|chr2 (4551505-4551649) | |
| 740-861, gnl|rheMac2|chr2 (56611087-56610943) | |
| 740-861, gnl|rn3|chr4 (143885627-143885771) | |
| 740-861, gnl|tetNig1|chr11 (6845099-6845236) | |
| 740-861, gnl|xenTro1|scaffold_173 (1687776-1687920) | |
| 1031-2143, gnl|bosTau2|chr22 (16590504-16589399) | |
| 1031-2143, gnl|Hg17|chr3 (4378941-4377835) | |
| 1031-2143, gnl|Mm7|chr6 (108202627-108201065) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| pro (1.02407) | |
| kid (0.648677) | |
| bla (0.497389) | |
| lun (0.451467) | |
| ski (0.440205) | |
| lyg (0.399308) | |
| cmu (0.372787) | |
| gul (0.355177) | |
| mga (0.32041) | |
| pty (0.285429) | |
| cst (0.280073) | |
| nca (0.273748) | |
| cov (0.264306) | |
| sug (0.254582) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (1.02407) | |
| kid (0.648677) | |
| bla (0.497389) | |
| lun (0.451467) | |
| ski (0.440205) | |
| lyg (0.399308) | |
| cmu (0.372787) | |
| gul (0.355177) | |
| mga (0.32041) | |
| pty (0.285429) | |
| cst (0.280073) | |
| nca (0.273748) | |
| cov (0.264306) | |
| sug (0.254582) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| cty (0.10408) | |
| eje (0.0988338) |