Non-Coding RNA Search

Ss1.1-Pig3-SRG8006L10.3

Sequence:


               
               CAGATCTCAACTCGCCTAACTTCAATTTCCAAGCCAACGTGGATGATGGCTCCTGTGAGG
GGAAAATGACCAATTTCTCCTTTGGTGGAGTTTATCAGCAATGCACCCAGCTCTCAGGGA
ATGAGTTTGTCCAACTCTGCCAAAACTTGGAGCAGAAGAATCCACTCACAGGTGATTTCT
CCTGCCCTTCTGGCTATTCCCCCATCCACCTGCTGACCCAGACCCATGAGGAGGGTTACA
ACCGCCTGGAGTGTTCACAGAAGTGCACTCTCCTCATTTTCTGCAAGACGGTGTGTGAAG
ATGTGTTCCGGGTGGCCAAGGCTGAGTTTAGGGCTTTTTGGTGTGTGGCCAGTGGCCAAG
TGTCAGAAAACTCAGGGCTACTTTTTGGGGGCCTCTTCAGCAGTAAGAGCATCAACCCTT
TGACAAACGCACAGTCGTGTCCAGCTGGCTATTTTCCCTTGAGACTTTTTGAGAACCTCA
AGATATGTGCCTCGCAGGACTACGAGTTGGGATTCCAGTTTTCAGTCCCTTTTGGCGGGT
TCTTTAGCTGTGTGGTCGGGAACCCCCTGGTGGATCCTGCCATATCTGGAGATTTAGGGG
CGCCTTCTCTAAAAAAGTGTCCGGGGGGTTTCAGCCAACACCTAGCCCTCATCAGTGATG
GGTGCCAAGTATCTTACTGTGTCAAGTCTGGGCTTTTTACAGGAGGGTTTCTACCTCCTG
CCAGGCTTCCACCTTACACCCGACCACCCCTCATGAGTCAGGCTGCCACCAACACTGTCA
TGGTGACAAATACTGAGACTGCCAGCTCCTGGATTAAAGATCCCCAGACGCACCGGTGGA
AGCTGGGAGAGCCGCTGGAGCTTCGCAGGGCCATGAAGGTCATCCATGGGGATGGCAGTG
CCCTGTCTGGAGGAGCAGCAGCTGGGGTCACACTGGGGGTCACCACCGTCCTGGCAGCTG
TCATCGCCCTGGCCATCTATGGCACCCGGAAGTACAAGAACAGGGGCTACCAGGCGGTCC
AGGATGAGAGGCAGAGTTTGGTTCCAGGTGCTGCAGTGACTGGAGACGCCCTTGACCAAG
GGCAGGAGCAGAGTCCAGCCTAGGTCCTCCCTGGAAACAGATGCTCTCATCTCCAGCCAG
CCCATCACGTGTGTCTTTCATTTTCCTTTCTTCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATCTCAACTCGCCTAACTTCAATTTCCAAGCCAACGTGGATGATGGCTCCTGTGAGG
GGAAAATGACCAATTTCTCCTTTGGTGGAGTTTATCAGCAATGCACCCAGCTCTCAGGGA
ATGAGTTTGTCCAACTCTGCCAAAACTTGGAGCAGAAGAATCCACTCACAGGTGATTTCT
CCTGCCCTTCTGGCTATTCCCCCATCCACCTGCTGACCCAGACCCATGAGGAGGGTTACA
ACCGCCTGGAGTGTTCACAGAAGTGCACTCTCCTCATTTTCTGCAAGACGGTGTGTGAAG
ATGTGTTCCGGGTGGCCAAGGCTGAGTTTAGGGCTTTTTGGTGTGTGGCCAGTGGCCAAG
TGTCAGAAAACTCAGGGCTACTTTTTGGGGGCCTCTTCAGCAGTAAGAGCATCAACCCTT
TGACAAACGCACAGTCGTGTCCAGCTGGCTATTTTCCCTTGAGACTTTTTGAGAACCTCA
AGATATGTGCCTCGCAGGACTACGAGTTGGGATTCCAGTTTTCAGTCCCTTTTGGCGGGT
TCTTTAGCTGTGTGGTCGGGAACCCCCTGGTGGATCCTGCCATATCTGGAGATTTAGGGG
CGCCTTCTCTAAAAAAGTGTCCGGGGGGTTTCAGCCAACACCTAGCCCTCATCAGTGATG
GGTGCCAAGTATCTTACTGTGTCAAGTCTGGGCTTTTTACAGGAGGGTTTCTACCTCCTG
CCAGGCTTCCACCTTACACCCGACCACCCCTCATGAGTCAGGCTGCCACCAACACTGTCA
TGGTGACAAATACTGAGACTGCCAGCTCCTGGATTAAAGATCCCCAGACGCACCGGTGGA
AGCTGGGAGAGCCGCTGGAGCTTCGCAGGGCCATGAAGGTCATCCATGGGGATGGCAGTG
CCCTGTCTGGAGGAGCAGCAGCTGGGGTCACACTGGGGGTCACCACCGTCCTGGCAGCTG
TCATCGCCCTGGCCATCTATGGCACCCGGAAGTACAAGAACAGGGGCTACCAGGCGGTCC
AGGATGAGAGGCAGAGTTTGGTTCCAGGTGCTGCAGTGACTGGAGACGCCCTTGACCAAG
GGCAGGAGCAGAGTCCAGCCTAGGTCCTCCCTGGAAACAGATGCTCTCATCTCCAGCCAG
CCCATCACGTGTGTCTTTCATTTTCCTTTCTTCACG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q80VB7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80VB7_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               120-239, - strand, RNAz p=0.987433
               

               
               520-679, - strand, RNAz p=0.944566
               

               
               800-919, + strand, RNAz p=0.836023

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.987433
               

               
               520-679, - strand, RNAz p=0.944566
               

               
               800-919, + strand, RNAz p=0.836023

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1171, gnl|bosTau2|chr15 (52321006-52322176)
               

               
               1-1171, gnl|Hg17|chr11 (58735863-58734717)
               

               
               1-1171, gnl|Mm7|chr19 (12142375-12143526)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1171, gnl|bosTau2|chr15 (52321006-52322176)
               

               
               1-1171, gnl|Hg17|chr11 (58735863-58734717)
               

               
               1-1171, gnl|Mm7|chr19 (12142375-12143526)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               ute (0.132784)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ute (0.132784)
               

               
               cly (0.120642)

	120-239, - strand, RNAz p=0.987433
	520-679, - strand, RNAz p=0.944566
	800-919, + strand, RNAz p=0.836023

	1-1171, gnl\|bosTau2\|chr15 (52321006-52322176)
	1-1171, gnl\|Hg17\|chr11 (58735863-58734717)
	1-1171, gnl\|Mm7\|chr19 (12142375-12143526)