Ss1.1-Pig3-SRG8006L12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGCGGACCGCGCACGAGGTGAGAAATAATCCAGACTTGGGAGTCCACCCAAAGGTGG ACTTGAGTGACCAAACCAGCATATCAGCTATTTCCGTGTACTGCATTGGAGCCAAAGCTG TCTAAAAAAAAAACCATGAATGATCCAAGAACTGTGCTTGATGTTGATGAGTACCCAGAC ACTGAGGCACAGAAAAACCGAATGCTAACTCTGGAAGAATGGCAAGAAAAATGGGTGAAT CGTAACATTTCATTTCATCAAGAACGAGGACATCAGCTACTAAAGAAGCATTTGGATACT TTTCTTAAAGACGAGAAAGGACTGCGGGTATTTTTTCCCCTTTGTGGAAAAGCCGTTGAG ATGAAATGGTTTGCAGACCGAGGACACAGTGTAGTTGGTGTGGAAATCAGTGAACTTGGG ATACGGGAATTTTTTACGGAGCAAGATCTTTCTTACTCAGAAGAACCAATTGCCGAAATT CCTGGAGCCAAAGTATTCAAGAGTTCTTCAGGGAACATTTCGTTGTACTGCTGCAATCTT TTTGATCTTCCCAGAGTAAATATTGGCAAATTTGACAGGATTTGGGATAGAGGAGCCTTC GTCGCCGTTAATCCAGGTGATCGCAAACGCTATGCAGATGTCATGCTGTCCCTAACGAGC ACTGGGTTTCAGTACTTCTTGTGCGTGTTGGCTTATGATCCAACCAAACATGCAGGTCCA CCATTTTATGTTCCAGATGCTGAAATTGAAAGATTGTTTGGTTCAGTATGCAATATTCAT TGTCTGGAGAAGGTTGACGTCTTTGAAGAACGTCATAAAAGTTGGGGAATCGACTACATT ATTGAAAAGTTGTACCTATTTACAGAAAAGTAACTGAGACATAAATAGAAGCAAGTAATA TCAACATGTTTTTGAGCAATTGAAATTGTGCTAAGACAGAAAAATATAATGGGCGACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGCGGACCGCGCACGAGGTGAGAAATAATCCAGACTTGGGAGTCCACCCAAAGGTGG ACTTGAGTGACCAAACCAGCATATCAGCTATTTCCGTGTACTGCATTGGAGCCAAAGCTG TCTAAAAAAAAAACCATGAATGATCCAAGAACTGTGCTTGATGTTGATGAGTACCCAGAC ACTGAGGCACAGAAAAACCGAATGCTAACTCTGGAAGAATGGCAAGAAAAATGGGTGAAT CGTAACATTTCATTTCATCAAGAACGAGGACATCAGCTACTAAAGAAGCATTTGGATACT TTTCTTAAAGACGAGAAAGGACTGCGGGTATTTTTTCCCCTTTGTGGAAAAGCCGTTGAG ATGAAATGGTTTGCAGACCGAGGACACAGTGTAGTTGGTGTGGAAATCAGTGAACTTGGG ATACGGGAATTTTTTACGGAGCAAGATCTTTCTTACTCAGAAGAACCAATTGCCGAAATT CCTGGAGCCAAAGTATTCAAGAGTTCTTCAGGGAACATTTCGTTGTACTGCTGCAATCTT TTTGATCTTCCCAGAGTAAATATTGGCAAATTTGACAGGATTTGGGATAGAGGAGCCTTC GTCGCCGTTAATCCAGGTGATCGCAAACGCTATGCAGATGTCATGCTGTCCCTAACGAGC ACTGGGTTTCAGTACTTCTTGTGCGTGTTGGCTTATGATCCAACCAAACATGCAGGTCCA CCATTTTATGTTCCAGATGCTGAAATTGAAAGATTGTTTGGTTCAGTATGCAATATTCAT TGTCTGGAGAAGGTTGACGTCTTTGAAGAACGTCATAAAAGTTGGGGAATCGACTACATT ATTGAAAAGTTGTACCTATTTACAGAAAAGTAACTGAGACATAAATAGAAGCAAGTAATA TCAACATGTTTTTGAGCAATTGAAATTGTGCTAAGACAGAAAAATATAATGGGCGACTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 130-276, gnl|bosTau2|chr23 (29773757-29773903) | |
| 130-276, gnl|canFam2|chr35 (19968609-19968777) | |
| 130-276, gnl|canFam2|chr35 (19968558-19968849) | |
| 130-276, gnl|canFam2|chr35 (19968609-19968766) | |
| 130-276, gnl|dasNov1|scaffold_177425 (2471-2308) | |
| 130-276, gnl|dasNov1|scaffold_177425 (2471-2314) | |
| 130-276, gnl|dasNov1|scaffold_42941 (11129-11420) | |
| 130-276, gnl|echTel1|scaffold_323913 (946-1151) | |
| 130-276, gnl|echTel1|scaffold_323913 (946-1107) | |
| 130-276, gnl|echTel1|scaffold_94537 (1278-1562) | |
| 130-276, gnl|hg17|chr3 (42162729-42162921) | |
| 130-276, gnl|hg17|chr6 (18257147-18257438) | |
| 130-276, gnl|Hg17|chr6 (18257343-18257197) | |
| 130-276, gnl|hg17|chrX (51556005-51556162) | |
| 130-276, gnl|loxAfr1|scaffold_41542 (33056-33346) | |
| 130-276, gnl|loxAfr1|scaffold_76437 (33214-33018) | |
| 130-276, gnl|loxAfr1|scaffold_76437 (33214-33053) | |
| 130-276, gnl|mm7|chr13 (46523446-46523736) | |
| 130-276, gnl|Mm7|chr13 (46523639-46523497) | |
| 130-276, gnl|mm7|chr6 (65316101-65315922) | |
| 130-276, gnl|mm7|chr6 (65316101-65315942) | |
| 130-276, gnl|monDom2|scaffold_3 (107293872-107294148) | |
| 130-276, gnl|oryCun1|scaffold_194706 (11859-11569) | |
| 130-276, gnl|oryCun1|scaffold_196093 (14368-14535) | |
| 130-276, gnl|oryCun1|scaffold_196093 (14368-14515) | |
| 130-276, gnl|panTro1|chr2 (43361173-43361365) | |
| 130-276, gnl|panTro1|chr5 (18628157-18628448) | |
| 130-276, gnl|panTro1|chrX_random (56761549-56761707) | |
| 130-276, gnl|rheMac2|chr2 (94441281-94441090) | |
| 130-276, gnl|rheMac2|chr2 (94441281-94441125) | |
| 130-276, gnl|rheMac2|chr4 (18195453-18195744) | |
| 130-276, gnl|rn3|chr17 (23701365-23701223) | |
| 130-276, gnl|rn3|chr17 (23701416-23701139) | |
| 130-276, gnl|rn3|chr17 (23701365-23701223) | |
| 368-501, gnl|bosTau2|chr23 (29778124-29778257) | |
| 368-501, gnl|canFam2|chr35 (19962287-19962191) | |
| 368-501, gnl|canFam2|chr35 (19962146-19962295) | |
| 368-501, gnl|dasNov1|scaffold_42941 (4217-4366) | |
| 368-501, gnl|dasNov1|scaffold_91002 (6155-6249) | |
| 368-501, gnl|echTel1|scaffold_323913 (625-531) | |
| 368-501, gnl|echTel1|scaffold_64188 (481-332) | |
| 368-501, gnl|galGal2|chr2 (60124090-60123941) | |
| 368-501, gnl|hg17|chr18 (43410714-43410810) | |
| 368-501, gnl|hg17|chr6 (18251799-18251948) | |
| 368-501, gnl|Hg17|chr6 (18251939-18251806) | |
| 368-501, gnl|loxAfr1|scaffold_41542 (25266-25415) | |
| 368-501, gnl|loxAfr1|scaffold_76437 (33306-33404) | |
| 368-501, gnl|mm7|chr13 (46517987-46518136) | |
| 368-501, gnl|Mm7|chr13 (46518127-46517994) | |
| 368-501, gnl|mm7|chr6 (65316192-65316288) | |
| 368-501, gnl|monDom2|scaffold_3 (107282034-107282187) | |
| 368-501, gnl|oryCun1|scaffold_143097 (17050-16920) | |
| 368-501, gnl|oryCun1|scaffold_196093 (13935-13842) | |
| 368-501, gnl|panTro1|chr17 (39776294-39776390) | |
| 368-501, gnl|panTro1|chr5 (18623138-18623287) | |
| 368-501, gnl|rheMac2|chr4 (18190086-18189990) | |
| 368-501, gnl|rheMac2|chr4 (18189945-18190094) | |
| 368-501, gnl|rn3|chr17 (23706791-23706887) | |
| 368-501, gnl|rn3|chr17 (23706932-23706783) | |
| 754-945, gnl|bosTau2|chr23 (29789867-29790061) | |
| 754-945, gnl|Hg17|chr6 (18238999-18238800) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-276, gnl|bosTau2|chr23 (29773757-29773903) | |
| 130-276, gnl|canFam2|chr35 (19968609-19968777) | |
| 130-276, gnl|canFam2|chr35 (19968558-19968849) | |
| 130-276, gnl|canFam2|chr35 (19968609-19968766) | |
| 130-276, gnl|dasNov1|scaffold_177425 (2471-2308) | |
| 130-276, gnl|dasNov1|scaffold_177425 (2471-2314) | |
| 130-276, gnl|dasNov1|scaffold_42941 (11129-11420) | |
| 130-276, gnl|echTel1|scaffold_323913 (946-1151) | |
| 130-276, gnl|echTel1|scaffold_323913 (946-1107) | |
| 130-276, gnl|echTel1|scaffold_94537 (1278-1562) | |
| 130-276, gnl|hg17|chr3 (42162729-42162921) | |
| 130-276, gnl|hg17|chr6 (18257147-18257438) | |
| 130-276, gnl|Hg17|chr6 (18257343-18257197) | |
| 130-276, gnl|hg17|chrX (51556005-51556162) | |
| 130-276, gnl|loxAfr1|scaffold_41542 (33056-33346) | |
| 130-276, gnl|loxAfr1|scaffold_76437 (33214-33018) | |
| 130-276, gnl|loxAfr1|scaffold_76437 (33214-33053) | |
| 130-276, gnl|mm7|chr13 (46523446-46523736) | |
| 130-276, gnl|Mm7|chr13 (46523639-46523497) | |
| 130-276, gnl|mm7|chr6 (65316101-65315922) | |
| 130-276, gnl|mm7|chr6 (65316101-65315942) | |
| 130-276, gnl|monDom2|scaffold_3 (107293872-107294148) | |
| 130-276, gnl|oryCun1|scaffold_194706 (11859-11569) | |
| 130-276, gnl|oryCun1|scaffold_196093 (14368-14535) | |
| 130-276, gnl|oryCun1|scaffold_196093 (14368-14515) | |
| 130-276, gnl|panTro1|chr2 (43361173-43361365) | |
| 130-276, gnl|panTro1|chr5 (18628157-18628448) | |
| 130-276, gnl|panTro1|chrX_random (56761549-56761707) | |
| 130-276, gnl|rheMac2|chr2 (94441281-94441090) | |
| 130-276, gnl|rheMac2|chr2 (94441281-94441125) | |
| 130-276, gnl|rheMac2|chr4 (18195453-18195744) | |
| 130-276, gnl|rn3|chr17 (23701365-23701223) | |
| 130-276, gnl|rn3|chr17 (23701416-23701139) | |
| 130-276, gnl|rn3|chr17 (23701365-23701223) | |
| 368-501, gnl|bosTau2|chr23 (29778124-29778257) | |
| 368-501, gnl|canFam2|chr35 (19962287-19962191) | |
| 368-501, gnl|canFam2|chr35 (19962146-19962295) | |
| 368-501, gnl|dasNov1|scaffold_42941 (4217-4366) | |
| 368-501, gnl|dasNov1|scaffold_91002 (6155-6249) | |
| 368-501, gnl|echTel1|scaffold_323913 (625-531) | |
| 368-501, gnl|echTel1|scaffold_64188 (481-332) | |
| 368-501, gnl|galGal2|chr2 (60124090-60123941) | |
| 368-501, gnl|hg17|chr18 (43410714-43410810) | |
| 368-501, gnl|hg17|chr6 (18251799-18251948) | |
| 368-501, gnl|Hg17|chr6 (18251939-18251806) | |
| 368-501, gnl|loxAfr1|scaffold_41542 (25266-25415) | |
| 368-501, gnl|loxAfr1|scaffold_76437 (33306-33404) | |
| 368-501, gnl|mm7|chr13 (46517987-46518136) | |
| 368-501, gnl|Mm7|chr13 (46518127-46517994) | |
| 368-501, gnl|mm7|chr6 (65316192-65316288) | |
| 368-501, gnl|monDom2|scaffold_3 (107282034-107282187) | |
| 368-501, gnl|oryCun1|scaffold_143097 (17050-16920) | |
| 368-501, gnl|oryCun1|scaffold_196093 (13935-13842) | |
| 368-501, gnl|panTro1|chr17 (39776294-39776390) | |
| 368-501, gnl|panTro1|chr5 (18623138-18623287) | |
| 368-501, gnl|rheMac2|chr4 (18190086-18189990) | |
| 368-501, gnl|rheMac2|chr4 (18189945-18190094) | |
| 368-501, gnl|rn3|chr17 (23706791-23706887) | |
| 368-501, gnl|rn3|chr17 (23706932-23706783) | |
| 754-945, gnl|bosTau2|chr23 (29789867-29790061) | |
| 754-945, gnl|Hg17|chr6 (18238999-18238800) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ton (0.1755) | |
| liv (0.146284) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| liv (0.146284) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ldo (0.0970026) |