Ss1.1-Pig3-SRG8006L18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGAAGTGGAGGAGGAAGAGGAGACCCTCTTGAACGCTTACACCACCCCCTCCAAGGGTT TGCCCCATGTTTTGAAATTGCATTCTACGTCTGGCATTTTCTAAAAACATTAGCACAATC CTTGAAGCTCAGAAGGAGAAAATTAACCATTCTATTCAGTTCCAACTCCATTTCCACTTA GGGACTTCTTCCTTTCCATTCATGTCCATGCATAGATGTCTTAACATGATGGCAGACCTT GTGGACGTGTGGTCTTCCTGTTTCTTCAGTTAACATATTGTAACATTTTTATAAATACAA TATTTCCATACTGGAGCTACAAATCCATGTTTCAGAAGCTCTCAGACATTCGAGAAGTTC TGACCTGTAAGATAGAAGAACTTGGCAGTGAACTCAAGGAGCATTACAAGATTGAGGCTT TTACTCCTGTTCTAGTCCCAGCGCAAGAGCCTGTCACGCTACTGGGCCAGATTGGCTGTG ACAGCAACGGGAAGCTGAACCACAAGTCGGTGATTCTCGAGGGAGATCGGGAACATTCCT CGGGGGCCCAAATTCCAGTGGATCTATCTGAGCTCAAAGAGTATTCTCTCTTCCCTGGAC AGGTTGTGGTCATGGAAGGAATCAACACCACCGGTAGAAAACTTGTTGCCACCAGACTCT ATGAGGGCGTGCCGCTTCCGTTCCATCAGCCCTCTGAAGAGGATGGAGATTCTGAGCAAA TCATGGTCCTGGTGGCCTGTGGGCCGTACACCACGTCAGACAGCATCGCCTTCGAGCCCC TGCTCGACCTGATCACCGTCATCAACCGCGACCGGCCGGACGTCTGCATCCTGTTTGGAC CTTTCCTGGATGCTAAGCATGAACAGGTGGAGAGCTGTCTACTGACAAGCCCATTTGAAG ATGTTTTCAAGCAATGTCTGCGAACCATTATTGAGGGGACACGAAGCTCCGGCTCCCACC TGGTCTTTGTCCCGTCGCTGAGGGACGTGCACCGCGAGCCTGTGTACCCGCAGCCTCCCT TCAGCTGCTCTGACCTGCCTCGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGAAGTGGAGGAGGAAGAGGAGACCCTCTTGAACGCTTACACCACCCCCTCCAAGGGTT TGCCCCATGTTTTGAAATTGCATTCTACGTCTGGCATTTTCTAAAAACATTAGCACAATC CTTGAAGCTCAGAAGGAGAAAATTAACCATTCTATTCAGTTCCAACTCCATTTCCACTTA GGGACTTCTTCCTTTCCATTCATGTCCATGCATAGATGTCTTAACATGATGGCAGACCTT GTGGACGTGTGGTCTTCCTGTTTCTTCAGTTAACATATTGTAACATTTTTATAAATACAA TATTTCCATACTGGAGCTACAAATCCATGTTTCAGAAGCTCTCAGACATTCGAGAAGTTC TGACCTGTAAGATAGAAGAACTTGGCAGTGAACTCAAGGAGCATTACAAGATTGAGGCTT TTACTCCTGTTCTAGTCCCAGCGCAAGAGCCTGTCACGCTACTGGGCCAGATTGGCTGTG ACAGCAACGGGAAGCTGAACCACAAGTCGGTGATTCTCGAGGGAGATCGGGAACATTCCT CGGGGGCCCAAATTCCAGTGGATCTATCTGAGCTCAAAGAGTATTCTCTCTTCCCTGGAC AGGTTGTGGTCATGGAAGGAATCAACACCACCGGTAGAAAACTTGTTGCCACCAGACTCT ATGAGGGCGTGCCGCTTCCGTTCCATCAGCCCTCTGAAGAGGATGGAGATTCTGAGCAAA TCATGGTCCTGGTGGCCTGTGGGCCGTACACCACGTCAGACAGCATCGCCTTCGAGCCCC TGCTCGACCTGATCACCGTCATCAACCGCGACCGGCCGGACGTCTGCATCCTGTTTGGAC CTTTCCTGGATGCTAAGCATGAACAGGTGGAGAGCTGTCTACTGACAAGCCCATTTGAAG ATGTTTTCAAGCAATGTCTGCGAACCATTATTGAGGGGACACGAAGCTCCGGCTCCCACC TGGTCTTTGTCCCGTCGCTGAGGGACGTGCACCGCGAGCCTGTGTACCCGCAGCCTCCCT TCAGCTGCTCTGACCTGCCTCGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-107, + strand, RNAz p=0.618742 | |
| 486-605, - strand, RNAz p=0.610722 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-107, + strand, RNAz p=0.618742 | |
| 486-605, - strand, RNAz p=0.610722 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-310, gnl|bosTau2|chr29 (34401922-34402237) | |
| 1-310, gnl|Hg17|chr11 (64792721-64793021) | |
| 447-615, gnl|bosTau2|chr29 (34410472-34410639) | |
| 447-615, gnl|canFam2|chr18 (54914709-54914546) | |
| 447-615, gnl|danRer3|chr8 (27699621-27699786) | |
| 447-615, gnl|dasNov1|scaffold_1974 (19519-19682) | |
| 447-615, gnl|echTel1|scaffold_181669 (1494-1658) | |
| 447-615, gnl|fr1|chrUn (28139044-28138884) | |
| 447-615, gnl|hg17|chr11 (64805038-64805201) | |
| 447-615, gnl|Hg17|chr11 (64805039-64805206) | |
| 447-615, gnl|mm7|chr19 (5846595-5846432) | |
| 447-615, gnl|Mm7|chr19 (5846592-5846425) | |
| 447-615, gnl|monDom2|scaffold_107 (3414829-3414666) | |
| 447-615, gnl|oryCun1|scaffold_206317 (48677-48840) | |
| 447-615, gnl|panTro1|chr9 (66048331-66048494) | |
| 447-615, gnl|rheMac2|chr14 (9162969-9162806) | |
| 447-615, gnl|rn3|chr1 (208738650-208738487) | |
| 447-615, gnl|tetNig1|chr1 (7803625-7803754) | |
| 447-615, gnl|xenTro1|scaffold_251 (1303590-1303427) | |
| 707-849, gnl|bosTau2|chr29 (34415568-34415710) | |
| 707-849, gnl|canFam2|chr18 (54909344-54909208) | |
| 707-849, gnl|danRer3|chr8 (27700596-27700732) | |
| 707-849, gnl|dasNov1|scaffold_1974 (23263-23399) | |
| 707-849, gnl|echTel1|scaffold_181669 (4441-4577) | |
| 707-849, gnl|fr1|chrUn (28138261-28138153) | |
| 707-849, gnl|hg17|chr11 (64811754-64811890) | |
| 707-849, gnl|Hg17|chr11 (64811761-64811892) | |
| 707-849, gnl|mm7|chr19 (5843343-5843207) | |
| 707-849, gnl|Mm7|chr19 (5843334-5843192) | |
| 707-849, gnl|monDom2|scaffold_107 (3413681-3413547) | |
| 707-849, gnl|oryCun1|scaffold_206317 (53037-53173) | |
| 707-849, gnl|panTro1|chr9 (66055064-66055200) | |
| 707-849, gnl|rheMac2|chr14 (9156289-9156153) | |
| 707-849, gnl|rn3|chr1 (208734569-208734433) | |
| 707-849, gnl|tetNig1|chr1 (7804691-7804815) | |
| 707-849, gnl|xenTro1|scaffold_251 (1297050-1296916) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-310, gnl|bosTau2|chr29 (34401922-34402237) | |
| 1-310, gnl|Hg17|chr11 (64792721-64793021) | |
| 447-615, gnl|bosTau2|chr29 (34410472-34410639) | |
| 447-615, gnl|canFam2|chr18 (54914709-54914546) | |
| 447-615, gnl|danRer3|chr8 (27699621-27699786) | |
| 447-615, gnl|dasNov1|scaffold_1974 (19519-19682) | |
| 447-615, gnl|echTel1|scaffold_181669 (1494-1658) | |
| 447-615, gnl|fr1|chrUn (28139044-28138884) | |
| 447-615, gnl|hg17|chr11 (64805038-64805201) | |
| 447-615, gnl|Hg17|chr11 (64805039-64805206) | |
| 447-615, gnl|mm7|chr19 (5846595-5846432) | |
| 447-615, gnl|Mm7|chr19 (5846592-5846425) | |
| 447-615, gnl|monDom2|scaffold_107 (3414829-3414666) | |
| 447-615, gnl|oryCun1|scaffold_206317 (48677-48840) | |
| 447-615, gnl|panTro1|chr9 (66048331-66048494) | |
| 447-615, gnl|rheMac2|chr14 (9162969-9162806) | |
| 447-615, gnl|rn3|chr1 (208738650-208738487) | |
| 447-615, gnl|tetNig1|chr1 (7803625-7803754) | |
| 447-615, gnl|xenTro1|scaffold_251 (1303590-1303427) | |
| 707-849, gnl|bosTau2|chr29 (34415568-34415710) | |
| 707-849, gnl|canFam2|chr18 (54909344-54909208) | |
| 707-849, gnl|danRer3|chr8 (27700596-27700732) | |
| 707-849, gnl|dasNov1|scaffold_1974 (23263-23399) | |
| 707-849, gnl|echTel1|scaffold_181669 (4441-4577) | |
| 707-849, gnl|fr1|chrUn (28138261-28138153) | |
| 707-849, gnl|hg17|chr11 (64811754-64811890) | |
| 707-849, gnl|Hg17|chr11 (64811761-64811892) | |
| 707-849, gnl|mm7|chr19 (5843343-5843207) | |
| 707-849, gnl|Mm7|chr19 (5843334-5843192) | |
| 707-849, gnl|monDom2|scaffold_107 (3413681-3413547) | |
| 707-849, gnl|oryCun1|scaffold_206317 (53037-53173) | |
| 707-849, gnl|panTro1|chr9 (66055064-66055200) | |
| 707-849, gnl|rheMac2|chr14 (9156289-9156153) | |
| 707-849, gnl|rn3|chr1 (208734569-208734433) | |
| 707-849, gnl|tetNig1|chr1 (7804691-7804815) | |
| 707-849, gnl|xenTro1|scaffold_251 (1297050-1296916) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nep (0.183925) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) |