Non-Coding RNA Search

Ss1.1-Pig3-SRG8006L22.5

Sequence:


               
               CAGAACAGCCTCCAATAGTGCCCTGTGTGTTGCCACTCTCCTTCCTGGTGGCAGCAGTGC
CTAGCAGTGGGATCATGTGCACGAGGGGAGGCAAGGGCTGGCCCCTCCAAAATCATTTTA
TCCCCATCTTGGACAGGCCTGGCACAGCCTGGTACAGTGGTTCAGAGCTTGTCATGCTTC
GAATCCCAATTCTGCATGAATCTTCGCAAGGTACTTAACCCCTCTATGCCCTGAAGCTGT
ATGTCTATAGTACTCCTCTCATGAGCTATTGACCCAAAAGTTCCATACTGCCCTGCTGGT
AGGGTCTCTGCCTCACAGCAATGTGCTAAAATTTAAAGAGTGCTGGGCAAGTACAGTGCC
TCCCCTTCTCCCTCACCTGCGTAGAACTAGTGTTCTGTGGCTTCTGCCATCATTTTGGAT
GAACAGGCCATGAGGTACATGGGAAACACCCTGGTTCTTCAGCCCTGCCACTTCTCCATA
GGTCATGTTCGTTCTTTATTTCTTGGTTTCTTCATCTGTGAACTCAAGAAGTTAAACATC
TCCTTAGAGGTTGGACTGTACTTTTAGCCCCAAGATTCTATGAGAAGATAATACTCTCAG
AAGCTGACTGATCTTCCATTTTTTCCCCGAGTATACATGAAACGTGTTGTTGGCTCAGCT
CTGTGCTGGGCTCTGGGAATTAAAAAATGAAAACAGAAAGTCTCTGCCCTCAGCCACTCC
TACAGAGGCAAACACTCCACAGATGATTCCTGTACAACAAGAGTTTTGTGATCCCCTAGA
GATGAAAGACTTCTGCCTTGGTTTTTACTAACATTTTATAATGGGAAGTAGGAGAGGTGC
AGGAAGTAGTTTCCTGATAGTGTTTGGCTCAGAGAGGAAGGACAATGTGTTTCAATGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAACAGCCTCCAATAGTGCCCTGTGTGTTGCCACTCTCCTTCCTGGTGGCAGCAGTGC
CTAGCAGTGGGATCATGTGCACGAGGGGAGGCAAGGGCTGGCCCCTCCAAAATCATTTTA
TCCCCATCTTGGACAGGCCTGGCACAGCCTGGTACAGTGGTTCAGAGCTTGTCATGCTTC
GAATCCCAATTCTGCATGAATCTTCGCAAGGTACTTAACCCCTCTATGCCCTGAAGCTGT
ATGTCTATAGTACTCCTCTCATGAGCTATTGACCCAAAAGTTCCATACTGCCCTGCTGGT
AGGGTCTCTGCCTCACAGCAATGTGCTAAAATTTAAAGAGTGCTGGGCAAGTACAGTGCC
TCCCCTTCTCCCTCACCTGCGTAGAACTAGTGTTCTGTGGCTTCTGCCATCATTTTGGAT
GAACAGGCCATGAGGTACATGGGAAACACCCTGGTTCTTCAGCCCTGCCACTTCTCCATA
GGTCATGTTCGTTCTTTATTTCTTGGTTTCTTCATCTGTGAACTCAAGAAGTTAAACATC
TCCTTAGAGGTTGGACTGTACTTTTAGCCCCAAGATTCTATGAGAAGATAATACTCTCAG
AAGCTGACTGATCTTCCATTTTTTCCCCGAGTATACATGAAACGTGTTGTTGGCTCAGCT
CTGTGCTGGGCTCTGGGAATTAAAAAATGAAAACAGAAAGTCTCTGCCCTCAGCCACTCC
TACAGAGGCAAACACTCCACAGATGATTCCTGTACAACAAGAGTTTTGTGATCCCCTAGA
GATGAAAGACTTCTGCCTTGGTTTTTACTAACATTTTATAATGGGAAGTAGGAGAGGTGC
AGGAAGTAGTTTCCTGATAGTGTTTGGCTCAGAGAGGAAGGACAATGTGTTTCAATGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               363-494, - strand, RNAz p=0.841193

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               363-494, - strand, RNAz p=0.841193

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               12-151, gnl|bosTau2|chr1 (29796268-29796408)
               

               
               12-151, gnl|Hg17|chr3 (120798083-120798254)
               


               
               166-900, gnl|bosTau2|chr1 (29796467-29797237)
               

               
               166-900, gnl|Hg17|chr3 (120798308-120799227)
               

               
               166-900, gnl|Mm7|chr16 (38140967-38140219)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-151, gnl|bosTau2|chr1 (29796268-29796408)
               

               
               12-151, gnl|Hg17|chr3 (120798083-120798254)
               


               
               166-900, gnl|bosTau2|chr1 (29796467-29797237)
               

               
               166-900, gnl|Hg17|chr3 (120798308-120799227)
               

               
               166-900, gnl|Mm7|chr16 (38140967-38140219)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               sug (0.127291)

	12-151, gnl\|bosTau2\|chr1 (29796268-29796408)
	12-151, gnl\|Hg17\|chr3 (120798083-120798254)

	166-900, gnl\|bosTau2\|chr1 (29796467-29797237)
	166-900, gnl\|Hg17\|chr3 (120798308-120799227)
	166-900, gnl\|Mm7\|chr16 (38140967-38140219)