Ss1.1-Pig3-SRG8006M10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTCGCCCTCGCGCCGTCGCTGGACCTGGCTGACTGGCGCTCCCGCGTCCGCCGCGAT GCGCAGCACTTCCTGTGCTTGTGCGCGCACCTCGACTGCACCCCGGACATCTGGGCGCTG CACGACTGGAGCTGTTGGTTCACGCCCTTCAGGAACTCCGACGTCCTCCGCTTCGAGACC TTGTTCTTCCTGTGCTGCCTGCGAGAGCCGCCCCAGGTCCTCTCGGACTCGGGAGAGATA GTGAACTGCCAGTGGTTATCTCCGTTAGAGGCAACTGAAAGTTTCCTGTCAGAGAAGGTT TGGTTTGCACCCCCACAGTTCTACGAAATAAGAAGACTAGAAAACTTCAGCTCTCTCTCT GACTTGCACAGATTTTGTGTGGATCGTGAATTAGAAGGGGCGGAAAGTTGGCTGCCCATC TTGTTAATAACTGCTGATAGGTTGATCCAGCTTTTACCAGGAGATGAGATGTATGTCGAA GATGTACACTATTTAGAAAATACTCTGGTCACTGAAAAAAAGAGTGAAGACATCACTAAG GAGGGCAAGAGATGGCACCGGATAGTGATCAATGGCTGGCATGATTACGACATCCATGTG ACCGTTCAGTCAAAATATAAACACATTTATCCCAAGAACTTCGTAGTGAGTAAAAGCCGT TTGTAGAGCACTCCTTCTTTGGAGTGCTGATGAAAACAGGTTTGACTAGCTTGGCTTGGA ACTCCAGGAGCTTCGTGCCTGTAGAATTCTAGAACAGTCCTACAGATTTCAAGTGTGTTG TGGAGCGCTTTATCTCACTCATTAATCCTTACAGCATCGCATGAGTCAAAGTATTAATGA CCTTGTTACCAAAATGAGAAAAGACATTTACAAGGGCTTCTACTTGTGGACTCTTTTATA ATCGAGAGTGTAAATAAGATGGATGAACACTTTGCTTGCTGTGCCAGGAGATTGATCCAC AAATTCCTTGGACTTTCTATTGGAATTAATTTCAGGGTGTCTGATTAGAACGATGGCGAA CAGTACACGAAGATGACCTTCATGTGACAGTGTCTTTTTTTTTAAATGATTTCAGCTTGA TGATTAAAATACAGCATGAGTTATTAGGTTTACCAAATTGGAAATTATTTTAGTGACCAT TTTAAAGAAATACACCATAATAAAAGCATAATTATTTTTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTCGCCCTCGCGCCGTCGCTGGACCTGGCTGACTGGCGCTCCCGCGTCCGCCGCGAT GCGCAGCACTTCCTGTGCTTGTGCGCGCACCTCGACTGCACCCCGGACATCTGGGCGCTG CACGACTGGAGCTGTTGGTTCACGCCCTTCAGGAACTCCGACGTCCTCCGCTTCGAGACC TTGTTCTTCCTGTGCTGCCTGCGAGAGCCGCCCCAGGTCCTCTCGGACTCGGGAGAGATA GTGAACTGCCAGTGGTTATCTCCGTTAGAGGCAACTGAAAGTTTCCTGTCAGAGAAGGTT TGGTTTGCACCCCCACAGTTCTACGAAATAAGAAGACTAGAAAACTTCAGCTCTCTCTCT GACTTGCACAGATTTTGTGTGGATCGTGAATTAGAAGGGGCGGAAAGTTGGCTGCCCATC TTGTTAATAACTGCTGATAGGTTGATCCAGCTTTTACCAGGAGATGAGATGTATGTCGAA GATGTACACTATTTAGAAAATACTCTGGTCACTGAAAAAAAGAGTGAAGACATCACTAAG GAGGGCAAGAGATGGCACCGGATAGTGATCAATGGCTGGCATGATTACGACATCCATGTG ACCGTTCAGTCAAAATATAAACACATTTATCCCAAGAACTTCGTAGTGAGTAAAAGCCGT TTGTAGAGCACTCCTTCTTTGGAGTGCTGATGAAAACAGGTTTGACTAGCTTGGCTTGGA ACTCCAGGAGCTTCGTGCCTGTAGAATTCTAGAACAGTCCTACAGATTTCAAGTGTGTTG TGGAGCGCTTTATCTCACTCATTAATCCTTACAGCATCGCATGAGTCAAAGTATTAATGA CCTTGTTACCAAAATGAGAAAAGACATTTACAAGGGCTTCTACTTGTGGACTCTTTTATA ATCGAGAGTGTAAATAAGATGGATGAACACTTTGCTTGCTGTGCCAGGAGATTGATCCAC AAATTCCTTGGACTTTCTATTGGAATTAATTTCAGGGTGTCTGATTAGAACGATGGCGAA CAGTACACGAAGATGACCTTCATGTGACAGTGTCTTTTTTTTTAAATGATTTCAGCTTGA TGATTAAAATACAGCATGAGTTATTAGGTTTACCAAATTGGAAATTATTTTAGTGACCAT TTTAAAGAAATACACCATAATAAAAGCATAATTATTTTTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.705378 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.705378 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-252, gnl|bosTau2|chr18 (35383279-35383028) | |
| 1-252, gnl|canFam2|chr1 (122223698-122223493) | |
| 1-252, gnl|danRer3|chr7 (28724003-28723769) | |
| 1-252, gnl|dasNov1|scaffold_2474 (96010-96215) | |
| 1-252, gnl|fr1|chrUn (180364283-180364061) | |
| 1-252, gnl|hg17|chr19 (37875171-37875376) | |
| 1-252, gnl|Hg17|chr19 (37875169-37875420) | |
| 1-252, gnl|loxAfr1|scaffold_13487 (11257-11462) | |
| 1-252, gnl|mm7|chr7 (32448428-32448226) | |
| 1-252, gnl|Mm7|chr7 (32448428-32448180) | |
| 1-252, gnl|monDom2|scaffold_35 (3838462-3838257) | |
| 1-252, gnl|oryCun1|scaffold_189279 (246303-246523) | |
| 1-252, gnl|panTro1|chrX (122150928-122150730) | |
| 1-252, gnl|rheMac2|chr19 (39212103-39212308) | |
| 1-252, gnl|rn3|chr1 (88170183-88169980) | |
| 1-252, gnl|tetNig1|chr5 (2957560-2957785) | |
| 583-919, gnl|bosTau2|chr18 (35377874-35377517) | |
| 583-919, gnl|canFam2|chr1 (122219281-122219039) | |
| 583-919, gnl|dasNov1|scaffold_74933 (7501-7270) | |
| 583-919, gnl|echTel1|scaffold_279377 (87749-87982) | |
| 583-919, gnl|Hg17|chr19 (37894627-37895618) | |
| 583-919, gnl|hg17|chr2 (173865543-173865781) | |
| 583-919, gnl|loxAfr1|scaffold_13487 (11825-12063) | |
| 583-919, gnl|mm7|chr3 (79978924-79978734) | |
| 583-919, gnl|oryCun1|scaffold_205532 (44548-44773) | |
| 583-919, gnl|panTro1|chr13 (63506664-63506905) | |
| 583-919, gnl|rheMac2|chr12 (36803897-36804135) | |
| 583-919, gnl|rn3|chr6 (124939241-124939461) | |
| 942-1090, gnl|bosTau2|chr18 (35377230-35377082) | |
| 942-1090, gnl|Hg17|chr19 (37895678-37895820) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-252, gnl|bosTau2|chr18 (35383279-35383028) | |
| 1-252, gnl|canFam2|chr1 (122223698-122223493) | |
| 1-252, gnl|danRer3|chr7 (28724003-28723769) | |
| 1-252, gnl|dasNov1|scaffold_2474 (96010-96215) | |
| 1-252, gnl|fr1|chrUn (180364283-180364061) | |
| 1-252, gnl|hg17|chr19 (37875171-37875376) | |
| 1-252, gnl|Hg17|chr19 (37875169-37875420) | |
| 1-252, gnl|loxAfr1|scaffold_13487 (11257-11462) | |
| 1-252, gnl|mm7|chr7 (32448428-32448226) | |
| 1-252, gnl|Mm7|chr7 (32448428-32448180) | |
| 1-252, gnl|monDom2|scaffold_35 (3838462-3838257) | |
| 1-252, gnl|oryCun1|scaffold_189279 (246303-246523) | |
| 1-252, gnl|panTro1|chrX (122150928-122150730) | |
| 1-252, gnl|rheMac2|chr19 (39212103-39212308) | |
| 1-252, gnl|rn3|chr1 (88170183-88169980) | |
| 1-252, gnl|tetNig1|chr5 (2957560-2957785) | |
| 583-919, gnl|bosTau2|chr18 (35377874-35377517) | |
| 583-919, gnl|canFam2|chr1 (122219281-122219039) | |
| 583-919, gnl|dasNov1|scaffold_74933 (7501-7270) | |
| 583-919, gnl|echTel1|scaffold_279377 (87749-87982) | |
| 583-919, gnl|Hg17|chr19 (37894627-37895618) | |
| 583-919, gnl|hg17|chr2 (173865543-173865781) | |
| 583-919, gnl|loxAfr1|scaffold_13487 (11825-12063) | |
| 583-919, gnl|mm7|chr3 (79978924-79978734) | |
| 583-919, gnl|oryCun1|scaffold_205532 (44548-44773) | |
| 583-919, gnl|panTro1|chr13 (63506664-63506905) | |
| 583-919, gnl|rheMac2|chr12 (36803897-36804135) | |
| 583-919, gnl|rn3|chr6 (124939241-124939461) | |
| 942-1090, gnl|bosTau2|chr18 (35377230-35377082) | |
| 942-1090, gnl|Hg17|chr19 (37895678-37895820) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| sme (0.305437) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| aor (0.195274) | |
| gul (0.177588) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| aor (0.195274) | |
| gul (0.177588) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| ldo (0.0970026) |