Non-Coding RNA Search

Ss1.1-Pig3-SRG8006N23.3

Sequence:


               
               GCACAGCGCGGCGCCGGGGCCGGGGCCAGGACCGCGATGGCAGCTCAGCGGCTGGGCAAG
CGGGTGCTGAGCAAGCTGCAGTCTCCGTCGCGGGCCCGGGGGCCGGGGGGCAGCCCCGGG
GGGCTGCAGAAGCGACACGCGCGTGTCACCGTCAAGTACGATCGGCGGGAGCTGCAGCGG
CGGCTGGACGTGGAGAAGTGGATCGACGGGCGCTTGGAGGAGCTGTACCGTGGCAGGGAG
GCAGACATGCCCGATGAAGTCAACATCGATGAACTGCTGGAATTAGAGAGTGAAGAGGAG
AGAAGCCGGAAAATTCAGGGACTCCTAAAGTCATGCACGAACCCCACAGAGAACTTTGTC
CAGGAGCTACTGGTGAAGCTGCGAGGCCTCCACAAGCAGCCGGGCCTCCGCCAGCCCAGC
CCCTCCGGCGACGGCAGCCTGAGTCCCCGCCAGGACCGCGCCCGGACCGCGCCGCCCTGA
CGCATGCCCCGGCCTCTGTGACCCCCCTCCGCCGCCCCTGCTTCCCCCCGGCCCTCAACA
CGGCCCGGCTTGTTTATACGTTGTATTTAATGGTTCTGTAACAATAACACTGCGTGCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGCGCGGCGCCGGGGCCGGGGCCAGGACCGCGATGGCAGCTCAGCGGCTGGGCAAG
CGGGTGCTGAGCAAGCTGCAGTCTCCGTCGCGGGCCCGGGGGCCGGGGGGCAGCCCCGGG
GGGCTGCAGAAGCGACACGCGCGTGTCACCGTCAAGTACGATCGGCGGGAGCTGCAGCGG
CGGCTGGACGTGGAGAAGTGGATCGACGGGCGCTTGGAGGAGCTGTACCGTGGCAGGGAG
GCAGACATGCCCGATGAAGTCAACATCGATGAACTGCTGGAATTAGAGAGTGAAGAGGAG
AGAAGCCGGAAAATTCAGGGACTCCTAAAGTCATGCACGAACCCCACAGAGAACTTTGTC
CAGGAGCTACTGGTGAAGCTGCGAGGCCTCCACAAGCAGCCGGGCCTCCGCCAGCCCAGC
CCCTCCGGCGACGGCAGCCTGAGTCCCCGCCAGGACCGCGCCCGGACCGCGCCGCCCTGA
CGCATGCCCCGGCCTCTGTGACCCCCCTCCGCCGCCCCTGCTTCCCCCCGGCCCTCAACA
CGGCCCGGCTTGTTTATACGTTGTATTTAATGGTTCTGTAACAATAACACTGCGTGCCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PP14A_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               PP14A_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.530027

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.530027

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-238, gnl|bosTau2|chr18 (43782305-43782542)
               

               
               1-238, gnl|Hg17|chr19 (43438854-43438618)
               

               
               1-238, gnl|Mm7|chr7 (26228576-26228806)
               


               
               350-598, gnl|bosTau2|chr18 (43786108-43786343)
               

               
               350-598, gnl|Hg17|chr19 (43433928-43433706)
               

               
               350-598, gnl|Mm7|chr7 (26232440-26232654)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-238, gnl|bosTau2|chr18 (43782305-43782542)
               

               
               1-238, gnl|Hg17|chr19 (43438854-43438618)
               

               
               1-238, gnl|Mm7|chr7 (26228576-26228806)
               


               
               350-598, gnl|bosTau2|chr18 (43786108-43786343)
               

               
               350-598, gnl|Hg17|chr19 (43433928-43433706)
               

               
               350-598, gnl|Mm7|chr7 (26232440-26232654)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               hyp (0.42851)
               

               
               elu (0.385356)
               

               
               pla (0.267344)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               elu (0.385356)
               

               
               pla (0.267344)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)

	1-238, gnl\|bosTau2\|chr18 (43782305-43782542)
	1-238, gnl\|Hg17\|chr19 (43438854-43438618)
	1-238, gnl\|Mm7\|chr7 (26228576-26228806)

	350-598, gnl\|bosTau2\|chr18 (43786108-43786343)
	350-598, gnl\|Hg17\|chr19 (43433928-43433706)
	350-598, gnl\|Mm7\|chr7 (26232440-26232654)

	hyp (0.42851)
	elu (0.385356)
	pla (0.267344)
	nlu (0.191681)
	fhi (0.169578)
	eli (0.151814)
	nmm (0.132802)
	cly (0.120642)