Non-Coding RNA Search

Ss1.1-Pig3-SRG8006O18.3

Sequence:


               
               GCGGCTCGAGCTTGGCAGTGTCAGCCATCCTGAAGATGTGGGAAGCTTACATGATGTACC
CTGGGTGGTAATTCCTCATCACATCAGTTTTGTTTCTTGGTGTAATTGTAGCCAAAGTAG
TGGTCTAGTGTTCCTCAAATCGGAGTACATTTGGGGACTTGAAGGAAATGAATGAGTTTA
TCTTGATCAAAAGACTCATAGGAACCTTTTATTAAAGCTGCAGTTTCAGCTCTGCTTTAT
GGAGTTTGCTATAAAATTATAGCTGCTTATGCTTATTTTCCCCAGTCTCACTTGGTGCTC
AATCACTGTATTCCTTTTCTTTAAAACTTTCATTTTTGAAATTATGTGTTTGGTTTACCC
TTATGATTGGGAAAAAAAATCTATTTTAAGCAGAAAACAGCATTCATTCACTTTCAATGA
ATGATATTTTCTAGACTATTTAGAGCAATAAATATTCCTGCGATGCACTAAAGCTTATAC
GGNGTTAGAGAAACATTTTAACAAGGATTCCTGATTTCATGTCCTGATTCTAAATATGAT
CAAAGAATTATTCCTTGTATTGTGGATTTCTTCTGTGGATGTGGGAAAACTTTTTAAGTT
ATAAAAAGCAATCCTGAGAAGTAATTTTAATAGATACCTTATAACACCTATCACATTGTC
TTGCCACTAGTAGAATTTGTTCACCTGTCTTTTCCAGATATCTCCTAAAAGGAGGCAAGG
AATATTACCCTTTCAATAAGTATGATTTAGTAATTGACAAAGATCAGAGCGATTATAATT
AACTCAGTCAACTTGATAAATGTTGATCAAGTAACCCACAGATCTGTGTCTCACGTAACT
CACAGTAGGGATTAGGAAGTTAGTGTTAAAAGTAAGTAGTATGTAGACATCACCCTCCTG
GAGTTTATACTCTCCTAGTGAAACCAAGTTTAGGTATAAAAGTAGTATTTAATACAGTTA
GGTCATAAGGAGACAAAGGTTAGAGCACATCTCTCATCAAAAAATCACAATGAACATTCT
CATCTCATTTTTGAAAGAAAGGTGTCCTTTTTTTCAATTCCTTTCTTTCCTCTTGTGCAA
AGCTACTCAGTAGATTAGGGTTATTGGTGTGGATCACCTCCTGGTTTACTTCTTACTGCC
AACCTGTTATGTTTATTAACTGCATTCTTGTGGAACAATGTGAAGTTGTCATGGTACATC
TAACAAAAGAACATCTCAAATTACAGCATCCTTGCTGATCTTCTCAAAGTCTGGTATTAT
TGAAATAAACAAAGAAAATGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCTTGGCAGTGTCAGCCATCCTGAAGATGTGGGAAGCTTACATGATGTACC
CTGGGTGGTAATTCCTCATCACATCAGTTTTGTTTCTTGGTGTAATTGTAGCCAAAGTAG
TGGTCTAGTGTTCCTCAAATCGGAGTACATTTGGGGACTTGAAGGAAATGAATGAGTTTA
TCTTGATCAAAAGACTCATAGGAACCTTTTATTAAAGCTGCAGTTTCAGCTCTGCTTTAT
GGAGTTTGCTATAAAATTATAGCTGCTTATGCTTATTTTCCCCAGTCTCACTTGGTGCTC
AATCACTGTATTCCTTTTCTTTAAAACTTTCATTTTTGAAATTATGTGTTTGGTTTACCC
TTATGATTGGGAAAAAAAATCTATTTTAAGCAGAAAACAGCATTCATTCACTTTCAATGA
ATGATATTTTCTAGACTATTTAGAGCAATAAATATTCCTGCGATGCACTAAAGCTTATAC
GGNGTTAGAGAAACATTTTAACAAGGATTCCTGATTTCATGTCCTGATTCTAAATATGAT
CAAAGAATTATTCCTTGTATTGTGGATTTCTTCTGTGGATGTGGGAAAACTTTTTAAGTT
ATAAAAAGCAATCCTGAGAAGTAATTTTAATAGATACCTTATAACACCTATCACATTGTC
TTGCCACTAGTAGAATTTGTTCACCTGTCTTTTCCAGATATCTCCTAAAAGGAGGCAAGG
AATATTACCCTTTCAATAAGTATGATTTAGTAATTGACAAAGATCAGAGCGATTATAATT
AACTCAGTCAACTTGATAAATGTTGATCAAGTAACCCACAGATCTGTGTCTCACGTAACT
CACAGTAGGGATTAGGAAGTTAGTGTTAAAAGTAAGTAGTATGTAGACATCACCCTCCTG
GAGTTTATACTCTCCTAGTGAAACCAAGTTTAGGTATAAAAGTAGTATTTAATACAGTTA
GGTCATAAGGAGACAAAGGTTAGAGCACATCTCTCATCAAAAAATCACAATGAACATTCT
CATCTCATTTTTGAAAGAAAGGTGTCCTTTTTTTCAATTCCTTTCTTTCCTCTTGTGCAA
AGCTACTCAGTAGATTAGGGTTATTGGTGTGGATCACCTCCTGGTTTACTTCTTACTGCC
AACCTGTTATGTTTATTAACTGCATTCTTGTGGAACAATGTGAAGTTGTCATGGTACATC
TAACAAAAGAACATCTCAAATTACAGCATCCTTGCTGATCTTCTCAAAGTCTGGTATTAT
TGAAATAAACAAAGAAAATGTAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               157-497, gnl|bosTau2|chr11 (38802054-38802393)
               

               
               157-497, gnl|Hg17|chr12 (24858800-24858453)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-497, gnl|bosTau2|chr11 (38802054-38802393)
               

               
               157-497, gnl|Hg17|chr12 (24858800-24858453)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	157-497, gnl\|bosTau2\|chr11 (38802054-38802393)
	157-497, gnl\|Hg17\|chr12 (24858800-24858453)