Non-Coding RNA Search

Ss1.1-Pig3-SRG8006P17.3

Sequence:


               
               TGCTCTCAATCATTAATAATCTTTATGATATCCAGTCATGCCTCAGTGAAAATCCTTGCC
AGCAAGGAGCCAGAGCATCTTTTGGCTGCTTTTCTGCTCTGCCCATCTGTCACCTTGGTT
TTCCTTGGCTCAGGAAGGAAGCAACTGTTTCCTTGCCAACAGGTCCTTCCTCTCCACCTC
CTAAGAAACCAGGGCATCATCTGTTAGACAGAGATACAGTGTGACTCAAATTTCTGACAG
TAAGCAACAATAGGACTGTGGATTTGTTTGAGGAACCTCTGTGGTTAAAGCTATAGCTGG
AGTCAACTGCCTGGGGCAATGTCTGTTAACTGAGGGTCAGTGACTTGCCAGAGGAAATCA
GGGGAAATTATTAGGTTTTGTTAAGGTAGAATTGTGGAATGTTCTTTTCTTTTTGCCTTT
TACAATTAAGACAAAATATGAAAGTATTCAATAACAATTTTTTATATTACACTTCCTTAA
TGATATTTTCTGTATCTTCCTTAGCTAGATAGGTAGATAGAAAGAATGGCAAACAAAAGA
GGAAGGGAGAAAAAAAGACTTTTAGACCAAGAAACCAAGACAAAAAGTTCCAGCTTGCTT
TAAGTTATTGCCTACAGAGACTTTTACAATTATGTGGAATTTTTAAAAGTATGAGAATAA
ATGGAACTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCTCAATCATTAATAATCTTTATGATATCCAGTCATGCCTCAGTGAAAATCCTTGCC
AGCAAGGAGCCAGAGCATCTTTTGGCTGCTTTTCTGCTCTGCCCATCTGTCACCTTGGTT
TTCCTTGGCTCAGGAAGGAAGCAACTGTTTCCTTGCCAACAGGTCCTTCCTCTCCACCTC
CTAAGAAACCAGGGCATCATCTGTTAGACAGAGATACAGTGTGACTCAAATTTCTGACAG
TAAGCAACAATAGGACTGTGGATTTGTTTGAGGAACCTCTGTGGTTAAAGCTATAGCTGG
AGTCAACTGCCTGGGGCAATGTCTGTTAACTGAGGGTCAGTGACTTGCCAGAGGAAATCA
GGGGAAATTATTAGGTTTTGTTAAGGTAGAATTGTGGAATGTTCTTTTCTTTTTGCCTTT
TACAATTAAGACAAAATATGAAAGTATTCAATAACAATTTTTTATATTACACTTCCTTAA
TGATATTTTCTGTATCTTCCTTAGCTAGATAGGTAGATAGAAAGAATGGCAAACAAAAGA
GGAAGGGAGAAAAAAAGACTTTTAGACCAAGAAACCAAGACAAAAAGTTCCAGCTTGCTT
TAAGTTATTGCCTACAGAGACTTTTACAATTATGTGGAATTTTTAAAAGTATGAGAATAA
ATGGAACTGGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               76-190, + strand, RNAz p=0.948066

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-190, + strand, RNAz p=0.948066

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_138333, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_138333, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-670, gnl|bosTau2|chr8 (20960602-20961271)
               

               
               3-670, gnl|Hg17|chr9 (68626413-68627082)
               

               
               3-670, gnl|Mm7|chr19 (24175556-24174755)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-670, gnl|bosTau2|chr8 (20960602-20961271)
               

               
               3-670, gnl|Hg17|chr9 (68626413-68627082)
               

               
               3-670, gnl|Mm7|chr19 (24175556-24174755)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	3-670, gnl\|bosTau2\|chr8 (20960602-20961271)
	3-670, gnl\|Hg17\|chr9 (68626413-68627082)
	3-670, gnl\|Mm7\|chr19 (24175556-24174755)