Ss1.1-Pig3-SRG8007B07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTACTATTTTAACGTTTTATTTAAATTTTTACTCAGTGCATAAACATTACAGCAGTCGG TTTAACTTGCCTGTGTTAGGGCAGTAGTGTTTTATCCCGGGACCTTTTTGCGCCTGCTTT TTGAGTTCTAAACATCCACGAATTCTTGGCATATTAAATTAGCTTTTAGACTTCAACCGA ATTCTGAGTTTTACGAACCAAATGTTTAGATGGAAATGATTAATCTGGGCTCCCTCTTTT CGGTGTACTTTTTTAAAAAATTACACTTTCAATCCTATTTTCTGTCTTCTCTACTTTTAG AAGTAGAACAAAAACATTTGAGTTCCTTAACTTTTTCGGGACGAGGAACGGTACAAACTC AAAGCTACAGCATTCTTGGGAGGAAGAAGCAACCCCCTCCCTCCCTTGGCTACTTTAGGA GCTGATAGGTCATTTATTATTGGAACTGAAATGGTATAAACAATTCTCTCTCTTTTTTCC CTTGTTAACAGCAACTTTCATTGTTAGAGAGAGGAGAGAGAGAGAAGCCTTGTTGGTTGA CGTCACTTGGTTCATGAAGCCTTCGCCTAGAAGTGAAGCTGCTGAACAAACCTTGAGAAG AATCATCTCCTGCTTCAATCTGCTGCTGGATAGGAACTAATCAGAAGAGAGAGGCGGAAG ACGGAGAAGGAGGGAGTCCAGGGCTTTCCCGATCACAAATCTCACCTCCACTCCAACTCT CTTTATACTTTTCTTGCAAAAATAGTAATAGAAATAAGGAGGTGGTAGGGTTTCCAAAAA CAAAAATCGTAACCTTCAACCATCTGGAGAAGGCAAAAATCCCATCCACCGCAACTCTCA GTTCGAAAGTAAAGGTGAGTTTAAAATCCTTGGGTGAGATTGACCGCACTGATCACAATA TGGAGTCTGGAGAAAGGTTACCATCCTCAACAACCTCCTCTACTACACCAACTTCATCTT CTATACCTTCTGTGGCTTCATCAGTTTCAAAAGGCGGCCTTTCCACTGGAGCTGCTTCAC TTAGCTCTACAATCAACCCATGTGTGTCTCTTTGTTGTGCTGGCTGGAAGGCTGGGATGG TGCTCGGGGTCCCGAGTGCAGTTTGGGGGAGGAGGACGCGGAGAAGCGTTGGTCTACATT GGAGGTGGGGGGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCT TAGCCGCACATCCCCAACTAGCGTCTTTTCCAGGTGCAGAATGGTGGCGAACAGCAGACG TTCATTCGCGTGCAGGGGCGACCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTG CTCCTCCAGCCCCTTCCAGCGCTCAGGTTGCCACCAACAGTTTTGCTTCTTAAACAACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTACTATTTTAACGTTTTATTTAAATTTTTACTCAGTGCATAAACATTACAGCAGTCGG TTTAACTTGCCTGTGTTAGGGCAGTAGTGTTTTATCCCGGGACCTTTTTGCGCCTGCTTT TTGAGTTCTAAACATCCACGAATTCTTGGCATATTAAATTAGCTTTTAGACTTCAACCGA ATTCTGAGTTTTACGAACCAAATGTTTAGATGGAAATGATTAATCTGGGCTCCCTCTTTT CGGTGTACTTTTTTAAAAAATTACACTTTCAATCCTATTTTCTGTCTTCTCTACTTTTAG AAGTAGAACAAAAACATTTGAGTTCCTTAACTTTTTCGGGACGAGGAACGGTACAAACTC AAAGCTACAGCATTCTTGGGAGGAAGAAGCAACCCCCTCCCTCCCTTGGCTACTTTAGGA GCTGATAGGTCATTTATTATTGGAACTGAAATGGTATAAACAATTCTCTCTCTTTTTTCC CTTGTTAACAGCAACTTTCATTGTTAGAGAGAGGAGAGAGAGAGAAGCCTTGTTGGTTGA CGTCACTTGGTTCATGAAGCCTTCGCCTAGAAGTGAAGCTGCTGAACAAACCTTGAGAAG AATCATCTCCTGCTTCAATCTGCTGCTGGATAGGAACTAATCAGAAGAGAGAGGCGGAAG ACGGAGAAGGAGGGAGTCCAGGGCTTTCCCGATCACAAATCTCACCTCCACTCCAACTCT CTTTATACTTTTCTTGCAAAAATAGTAATAGAAATAAGGAGGTGGTAGGGTTTCCAAAAA CAAAAATCGTAACCTTCAACCATCTGGAGAAGGCAAAAATCCCATCCACCGCAACTCTCA GTTCGAAAGTAAAGGTGAGTTTAAAATCCTTGGGTGAGATTGACCGCACTGATCACAATA TGGAGTCTGGAGAAAGGTTACCATCCTCAACAACCTCCTCTACTACACCAACTTCATCTT CTATACCTTCTGTGGCTTCATCAGTTTCAAAAGGCGGCCTTTCCACTGGAGCTGCTTCAC TTAGCTCTACAATCAACCCATGTGTGTCTCTTTGTTGTGCTGGCTGGAAGGCTGGGATGG TGCTCGGGGTCCCGAGTGCAGTTTGGGGGAGGAGGACGCGGAGAAGCGTTGGTCTACATT GGAGGTGGGGGGGGCATTCAGAATTTGGTGGTTTGGGGACACTTGGTACACCCACAGCCT TAGCCGCACATCCCCAACTAGCGTCTTTTCCAGGTGCAGAATGGTGGCGAACAGCAGACG TTCATTCGCGTGCAGGGGCGACCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTG CTCCTCCAGCCCCTTCCAGCGCTCAGGTTGCCACCAACAGTTTTGCTTCTTAAACAACCT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 421-538, - strand, RNAz p=0.952036 | |
| 738-855, + strand, RNAz p=0.521055 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 421-538, - strand, RNAz p=0.952036 | |
| 738-855, + strand, RNAz p=0.521055 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 760-827, - strand, RNAmicro p=0.993858 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 421-505, BW957090 full-length enriched swine cDNA library, adult alveolar (dbj|BW957090.1|), blast E-value=3e-39, identity=100% | |
| 421-505, DB810446 full-length enriched swine cDNA library, adult liver Sus (dbj|DB810446.1|), blast E-value=3e-39, identity=100% | |
| 421-505, BX430919 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb|BX430919.2|), blast E-value=4e-35, identity=98.84% | |
| 428-505, 275764 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF652255.1|), blast E-value=4e-35, identity=100% | |
| 421-505, 480987 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI899100.1|), blast E-value=6e-37, identity=98.82% | |
| 421-505, UI-H-EU1-bad-k-22-0-UI.s1 NCI_CGAP_Ct1 Homo sapiens cDNA clone (gb|BQ447188.1|), blast E-value=4e-35, identity=98.84% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 421-505, BW957090 full-length enriched swine cDNA library, adult alveolar (dbj|BW957090.1|), blast E-value=3e-39, identity=100% | |
| 421-505, DB810446 full-length enriched swine cDNA library, adult liver Sus (dbj|DB810446.1|), blast E-value=3e-39, identity=100% | |
| 421-505, BX430919 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb|BX430919.2|), blast E-value=4e-35, identity=98.84% | |
| 428-505, 275764 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF652255.1|), blast E-value=4e-35, identity=100% | |
| 421-505, 480987 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI899100.1|), blast E-value=6e-37, identity=98.82% | |
| 421-505, UI-H-EU1-bad-k-22-0-UI.s1 NCI_CGAP_Ct1 Homo sapiens cDNA clone (gb|BQ447188.1|), blast E-value=4e-35, identity=98.84% |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 2-879, gnl|bosTau2|chr23 (14823682-14824546) | |
| 2-879, gnl|Hg17|chr2 (160299106-160298235) | |
| 2-879, gnl|Mm7|chr2 (60056848-60055989) | |
| 900-1044, gnl|bosTau2|chr23 (15060370-15060514) | |
| 900-1044, gnl|canFam2|chr36 (8218802-8219153) | |
| 900-1044, gnl|dasNov1|scaffold_114778 (844-1190) | |
| 900-1044, gnl|echTel1|scaffold_286234 (39613-39279) | |
| 900-1044, gnl|hg17|chr2 (160160516-160160842) | |
| 900-1044, gnl|Hg17|chr2 (160160737-160160593) | |
| 900-1044, gnl|loxAfr1|scaffold_7678 (83496-83141) | |
| 900-1044, gnl|mm7|chr2 (59936514-59936836) | |
| 900-1044, gnl|Mm7|chr2 (59936736-59936592) | |
| 900-1044, gnl|monDom2|scaffold_2 (53300736-53301138) | |
| 900-1044, gnl|panTro1|chr13 (49529594-49529924) | |
| 900-1044, gnl|rheMac2|chr12 (23029588-23029913) | |
| 900-1044, gnl|rn3|chr3 (41616797-41617111) | |
| 1232-1332, gnl|bosTau2|chr23 (15085004-15085104) | |
| 1232-1332, gnl|canFam2|chr36 (8196593-8196763) | |
| 1232-1332, gnl|dasNov1|scaffold_23263 (12924-12754) | |
| 1232-1332, gnl|echTel1|scaffold_230621 (5638-5808) | |
| 1232-1332, gnl|fr1|chrUn (268902518-268902688) | |
| 1232-1332, gnl|galGal2|chr7 (37218158-37218328) | |
| 1232-1332, gnl|hg17|chr2 (160130258-160130428) | |
| 1232-1332, gnl|Hg17|chr2 (160130429-160130329) | |
| 1232-1332, gnl|loxAfr1|scaffold_45115 (1034-864) | |
| 1232-1332, gnl|mm7|chr2 (59909090-59909257) | |
| 1232-1332, gnl|Mm7|chr2 (59909258-59909158) | |
| 1232-1332, gnl|monDom2|scaffold_2 (53267757-53267927) | |
| 1232-1332, gnl|oryCun1|scaffold_180640 (13442-13609) | |
| 1232-1332, gnl|panTro1|chr13 (49498983-49499153) | |
| 1232-1332, gnl|rheMac2|chr12 (22995000-22995170) | |
| 1232-1332, gnl|rn3|chr3 (41589771-41589938) | |
| 1232-1332, gnl|xenTro1|scaffold_311 (1117747-1117586) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-879, gnl|bosTau2|chr23 (14823682-14824546) | |
| 2-879, gnl|Hg17|chr2 (160299106-160298235) | |
| 2-879, gnl|Mm7|chr2 (60056848-60055989) | |
| 900-1044, gnl|bosTau2|chr23 (15060370-15060514) | |
| 900-1044, gnl|canFam2|chr36 (8218802-8219153) | |
| 900-1044, gnl|dasNov1|scaffold_114778 (844-1190) | |
| 900-1044, gnl|echTel1|scaffold_286234 (39613-39279) | |
| 900-1044, gnl|hg17|chr2 (160160516-160160842) | |
| 900-1044, gnl|Hg17|chr2 (160160737-160160593) | |
| 900-1044, gnl|loxAfr1|scaffold_7678 (83496-83141) | |
| 900-1044, gnl|mm7|chr2 (59936514-59936836) | |
| 900-1044, gnl|Mm7|chr2 (59936736-59936592) | |
| 900-1044, gnl|monDom2|scaffold_2 (53300736-53301138) | |
| 900-1044, gnl|panTro1|chr13 (49529594-49529924) | |
| 900-1044, gnl|rheMac2|chr12 (23029588-23029913) | |
| 900-1044, gnl|rn3|chr3 (41616797-41617111) | |
| 1232-1332, gnl|bosTau2|chr23 (15085004-15085104) | |
| 1232-1332, gnl|canFam2|chr36 (8196593-8196763) | |
| 1232-1332, gnl|dasNov1|scaffold_23263 (12924-12754) | |
| 1232-1332, gnl|echTel1|scaffold_230621 (5638-5808) | |
| 1232-1332, gnl|fr1|chrUn (268902518-268902688) | |
| 1232-1332, gnl|galGal2|chr7 (37218158-37218328) | |
| 1232-1332, gnl|hg17|chr2 (160130258-160130428) | |
| 1232-1332, gnl|Hg17|chr2 (160130429-160130329) | |
| 1232-1332, gnl|loxAfr1|scaffold_45115 (1034-864) | |
| 1232-1332, gnl|mm7|chr2 (59909090-59909257) | |
| 1232-1332, gnl|Mm7|chr2 (59909258-59909158) | |
| 1232-1332, gnl|monDom2|scaffold_2 (53267757-53267927) | |
| 1232-1332, gnl|oryCun1|scaffold_180640 (13442-13609) | |
| 1232-1332, gnl|panTro1|chr13 (49498983-49499153) | |
| 1232-1332, gnl|rheMac2|chr12 (22995000-22995170) | |
| 1232-1332, gnl|rn3|chr3 (41589771-41589938) | |
| 1232-1332, gnl|xenTro1|scaffold_311 (1117747-1117586) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| cag (0.151194) | |
| lun (0.150489) | |
| ova (0.129132) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| cag (0.151194) | |
| lun (0.150489) | |
| ova (0.129132) |