Non-Coding RNA Search

Ss1.1-Pig3-SRG8007B22.3

Sequence:


               
               TGAACTTGGGCCGGGGTGATACTTTTATAAGCATCGTCTCCTTCTCCAGATGGGAGTAGA
CCAGGTCTCCGTGGGATCCTCAAGAGCTCCAGGGTTCCTAGGGTGTTTTTTTAAAAATCC
CTGGGAGGTCCCTTTTGCATTCATAGAATATGAAGGACAGACGACCAAGTGAAAAATCCA
GACTTGCTTCAACACCCGCTAGCATTTATCTTCTCTTCCTCTTCCCTGTGAAGTAAAGGC
CTTTGAAATCACAGTTTTATTTTTTTAAAAGACGTTGTTTTTGTGCCTAGAGCAAGGATG
CATCAGATGTTTTTAAAGGGCCTAACTTAGGTCGTGGGCCCGAGACTACTACCACTGTTT
ATTTAAATACACAGATGCGTAATAATTCTTCTTGTTGTGATAAATGAGAACTCTAAATAA
AAATCAAATTTACTCCTGAAAAAACTGTAGAAATACTTGGCCTTAATAGGGTCACTTTCT
GCGGGAAAATTGATTTCTGCCGTCTTCAATCCGTGGCTGTGCGTTTGCATATGAGAAACT
GGAGAATAAAGCAAAAAAGTCCTTCTCGGCCAAAAGAGTTATCAACTATATAGGTGGTTC
TACATTTACCACTGTTTACTGATGCAAAGGACTTAATTTTTTTAACTAACGGCAGGTGCA
TGGCTGTAGCCATGGGGGAAACTAAATGGAGCCGCTGTGGCTCCTGAGCTCTGTGAATCC
CTCTGGGTTATTCCAAATTAATCAACAGAAGAAACGTGCGTTTGGCCCATGAATCTGTAA
AGGTGTGTCTTTCTGTGCCACACGATGGTGTGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACTTGGGCCGGGGTGATACTTTTATAAGCATCGTCTCCTTCTCCAGATGGGAGTAGA
CCAGGTCTCCGTGGGATCCTCAAGAGCTCCAGGGTTCCTAGGGTGTTTTTTTAAAAATCC
CTGGGAGGTCCCTTTTGCATTCATAGAATATGAAGGACAGACGACCAAGTGAAAAATCCA
GACTTGCTTCAACACCCGCTAGCATTTATCTTCTCTTCCTCTTCCCTGTGAAGTAAAGGC
CTTTGAAATCACAGTTTTATTTTTTTAAAAGACGTTGTTTTTGTGCCTAGAGCAAGGATG
CATCAGATGTTTTTAAAGGGCCTAACTTAGGTCGTGGGCCCGAGACTACTACCACTGTTT
ATTTAAATACACAGATGCGTAATAATTCTTCTTGTTGTGATAAATGAGAACTCTAAATAA
AAATCAAATTTACTCCTGAAAAAACTGTAGAAATACTTGGCCTTAATAGGGTCACTTTCT
GCGGGAAAATTGATTTCTGCCGTCTTCAATCCGTGGCTGTGCGTTTGCATATGAGAAACT
GGAGAATAAAGCAAAAAAGTCCTTCTCGGCCAAAAGAGTTATCAACTATATAGGTGGTTC
TACATTTACCACTGTTTACTGATGCAAAGGACTTAATTTTTTTAACTAACGGCAGGTGCA
TGGCTGTAGCCATGGGGGAAACTAAATGGAGCCGCTGTGGCTCCTGAGCTCTGTGAATCC
CTCTGGGTTATTCCAAATTAATCAACAGAAGAAACGTGCGTTTGGCCCATGAATCTGTAA
AGGTGTGTCTTTCTGTGCCACACGATGGTGTGAGCC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-773, gnl|bosTau2|chr1 (92203006-92202238)
               

               
               1-773, gnl|canFam2|chr31 (38546587-38547565)
               

               
               1-773, gnl|dasNov1|scaffold_169391 (767-1707)
               

               
               1-773, gnl|echTel1|scaffold_258678 (5170-4155)
               

               
               1-773, gnl|hg17|chr21 (42091478-42092488)
               

               
               1-773, gnl|Hg17|chr21 (42092605-42091851)
               

               
               1-773, gnl|loxAfr1|scaffold_14516 (11104-10037)
               

               
               1-773, gnl|mm7|chr16 (98175021-98175933)
               

               
               1-773, gnl|monDom2|scaffold_29 (1513442-1512464)
               

               
               1-773, gnl|panTro1|chr22 (42193975-42194985)
               

               
               1-773, gnl|rheMac2|chr3 (4872484-4871471)
               

               
               1-773, gnl|rn3|chr11 (37867446-37868347)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-773, gnl|bosTau2|chr1 (92203006-92202238)
               

               
               1-773, gnl|canFam2|chr31 (38546587-38547565)
               

               
               1-773, gnl|dasNov1|scaffold_169391 (767-1707)
               

               
               1-773, gnl|echTel1|scaffold_258678 (5170-4155)
               

               
               1-773, gnl|hg17|chr21 (42091478-42092488)
               

               
               1-773, gnl|Hg17|chr21 (42092605-42091851)
               

               
               1-773, gnl|loxAfr1|scaffold_14516 (11104-10037)
               

               
               1-773, gnl|mm7|chr16 (98175021-98175933)
               

               
               1-773, gnl|monDom2|scaffold_29 (1513442-1512464)
               

               
               1-773, gnl|panTro1|chr22 (42193975-42194985)
               

               
               1-773, gnl|rheMac2|chr3 (4872484-4871471)
               

               
               1-773, gnl|rn3|chr11 (37867446-37868347)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               jca (0.11396)

	1-773, gnl\|bosTau2\|chr1 (92203006-92202238)
	1-773, gnl\|canFam2\|chr31 (38546587-38547565)
	1-773, gnl\|dasNov1\|scaffold_169391 (767-1707)
	1-773, gnl\|echTel1\|scaffold_258678 (5170-4155)
	1-773, gnl\|hg17\|chr21 (42091478-42092488)
	1-773, gnl\|Hg17\|chr21 (42092605-42091851)
	1-773, gnl\|loxAfr1\|scaffold_14516 (11104-10037)
	1-773, gnl\|mm7\|chr16 (98175021-98175933)
	1-773, gnl\|monDom2\|scaffold_29 (1513442-1512464)
	1-773, gnl\|panTro1\|chr22 (42193975-42194985)
	1-773, gnl\|rheMac2\|chr3 (4872484-4871471)
	1-773, gnl\|rn3\|chr11 (37867446-37868347)