Non-Coding RNA Search

Ss1.1-Pig3-SRG8007D19.3

Sequence:


               
               GCATCCAGAACTACTCCACTACAAGCAGCTGCCAGGCCCGGGCCAGCCAGGTGCGCAGTG
ACTACGGGACGCTCTTTGTGGTGCTGGTGGTCATCGGTGCCATCTGTGTGGTCATCATCG
TGCTGGGCTTGCTCTATAACTGCTGGCAGCGCCGGCTGCCCAAGCTGAAACACGTGTCGC
ACGGCGAGGAGCTGCGCTTCGTGGAGAACGGCTGCCACGACAACCCCACGCTGGACGTGG
CCAGCGACAGCCAGTCGGAGATGCAGGAGAAGCAGCCCAGCCTGAATGGCGGCGGCGCGG
TCAACGGCCCGGGGGGATGGAGCGCGCTCATGGGGGGCAAGCGTGACCCCGAGGACTCAG
ACGTGTTTGAGGAGGACACGCACCTGTGAGGGGCTGAGCCCCGCCCGGCCCGGGCCTCGG
CGTGGGGTCCTCTGCCTCCCCCTCCAGTGACTCTCGACGCATCTCGGCACCCCCCACCCC
CCCGACCCGACGCCCCGCGGGGCGCCCGGGACCCTATTAAAGCCGCCGGGAGAGCACGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCCAGAACTACTCCACTACAAGCAGCTGCCAGGCCCGGGCCAGCCAGGTGCGCAGTG
ACTACGGGACGCTCTTTGTGGTGCTGGTGGTCATCGGTGCCATCTGTGTGGTCATCATCG
TGCTGGGCTTGCTCTATAACTGCTGGCAGCGCCGGCTGCCCAAGCTGAAACACGTGTCGC
ACGGCGAGGAGCTGCGCTTCGTGGAGAACGGCTGCCACGACAACCCCACGCTGGACGTGG
CCAGCGACAGCCAGTCGGAGATGCAGGAGAAGCAGCCCAGCCTGAATGGCGGCGGCGCGG
TCAACGGCCCGGGGGGATGGAGCGCGCTCATGGGGGGCAAGCGTGACCCCGAGGACTCAG
ACGTGTTTGAGGAGGACACGCACCTGTGAGGGGCTGAGCCCCGCCCGGCCCGGGCCTCGG
CGTGGGGTCCTCTGCCTCCCCCTCCAGTGACTCTCGACGCATCTCGGCACCCCCCACCCC
CCCGACCCGACGCCCCGCGGGGCGCCCGGGACCCTATTAAAGCCGCCGGGAGAGCACGCC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-176, gnl|bosTau2|chr22 (47708134-47707959)
               

               
               1-176, gnl|canFam2|chr20 (4756340-4756550)
               

               
               1-176, gnl|danRer3|chr11 (8360843-8361032)
               

               
               1-176, gnl|echTel1|scaffold_314962 (66409-66605)
               

               
               1-176, gnl|fr1|chrUn (224982929-224983119)
               

               
               1-176, gnl|galGal2|chr12 (9724112-9723913)
               

               
               1-176, gnl|hg17|chr3 (128872972-128873163)
               

               
               1-176, gnl|Hg17|chr3 (128872979-128873154)
               

               
               1-176, gnl|mm7|chr6 (88918784-88918595)
               

               
               1-176, gnl|Mm7|chr6 (88918775-88918600)
               

               
               1-176, gnl|monDom2|scaffold_5 (46055427-46055626)
               

               
               1-176, gnl|rn3|chr4 (123182943-123182754)
               

               
               1-176, gnl|tetNig1|chrUn_random (5789348-5789171)
               

               
               1-176, gnl|xenTro1|scaffold_72 (615211-615405)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-176, gnl|bosTau2|chr22 (47708134-47707959)
               

               
               1-176, gnl|canFam2|chr20 (4756340-4756550)
               

               
               1-176, gnl|danRer3|chr11 (8360843-8361032)
               

               
               1-176, gnl|echTel1|scaffold_314962 (66409-66605)
               

               
               1-176, gnl|fr1|chrUn (224982929-224983119)
               

               
               1-176, gnl|galGal2|chr12 (9724112-9723913)
               

               
               1-176, gnl|hg17|chr3 (128872972-128873163)
               

               
               1-176, gnl|Hg17|chr3 (128872979-128873154)
               

               
               1-176, gnl|mm7|chr6 (88918784-88918595)
               

               
               1-176, gnl|Mm7|chr6 (88918775-88918600)
               

               
               1-176, gnl|monDom2|scaffold_5 (46055427-46055626)
               

               
               1-176, gnl|rn3|chr4 (123182943-123182754)
               

               
               1-176, gnl|tetNig1|chrUn_random (5789348-5789171)
               

               
               1-176, gnl|xenTro1|scaffold_72 (615211-615405)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-176, gnl\|bosTau2\|chr22 (47708134-47707959)
	1-176, gnl\|canFam2\|chr20 (4756340-4756550)
	1-176, gnl\|danRer3\|chr11 (8360843-8361032)
	1-176, gnl\|echTel1\|scaffold_314962 (66409-66605)
	1-176, gnl\|fr1\|chrUn (224982929-224983119)
	1-176, gnl\|galGal2\|chr12 (9724112-9723913)
	1-176, gnl\|hg17\|chr3 (128872972-128873163)
	1-176, gnl\|Hg17\|chr3 (128872979-128873154)
	1-176, gnl\|mm7\|chr6 (88918784-88918595)
	1-176, gnl\|Mm7\|chr6 (88918775-88918600)
	1-176, gnl\|monDom2\|scaffold_5 (46055427-46055626)
	1-176, gnl\|rn3\|chr4 (123182943-123182754)
	1-176, gnl\|tetNig1\|chrUn_random (5789348-5789171)
	1-176, gnl\|xenTro1\|scaffold_72 (615211-615405)

	fce (0.271592)
	hyp (0.142837)
	ese (0.126502)
	ebs (0.118301)
	ecc (0.115035)