Ss1.1-Pig3-SRG8007E07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGGCGAGCGCTCAGACCAGCCGGAGGAACCCCGCGGACGGTTCAGCTGTGAAATCGAA CATGAAAATCCTCGTGGCCTTGGCAGTCTTTTTTCTCGTCTCTACTCAACTGTTTGCAGA AGAAATCGGAGCCAACGATGATCTGAATTATTGGTCCGACTGGTCAGACAGCGACCAGAT AAAGGAGGAGCTGCCGGAGCCCTTTGAGCATCTTCTTCAGAGAATCGCGCGGAGACCCAA GCCTCAGCAGTTCTTCGGATTAATGGGCAAACGGGATGCTGGACATGGCCAGATCTCTCA TAAAAGGCATAAAACAGATTCCTTTGTTGGACTAATGGGCAAAAGAGCTTTAAATTCTGT GGCTTATGAAAGGAGTGCAATGCAGAATTATGAAAGAAGACGTAAATAAACTACCTAACG TATTATTTATCCAGCTTCATTTGTGTCAATGGCTGATGAAAGGTAAAATGAGACAGACGC TATGAAGAATAATTATTTATTTAATAATAATTGTTGTTTTGAGTTGAAAACTCAAAAAGT ATTTATTTTTCATATTGTGCCAAGATGTGTTGTAAAAGTGTGTTATAATTCTAACATGGC AACTCCCTCAGAAATAGAAATCAGTGGTAATTTCTCAACAAAGCAGTGTTCAATGAAGTG GTAGGAACCTATCAATGATACAGTCTCCAAAGAAAGAAATAATTTCTGTTTCTCAAGAGC AGTCATATCAGCGACGTGTGAAGAAAGGAAACTCACAGATATGCTGTGCTTCTCCATTTG TTTTCATGGTGAAAATGTACTGAGATTTGGTAGCAAACTGTGGTGTATCCCTGAAGCATG TTTCATGGTTTATGACTATATAGAGATGTTTTAAAAGTTTTAATGTGATTCTAAGGTCTT AATTTTATTGTACAATGTGTTGTGATAGTTAACATTTTAAATAAAAGAAAAAATATCTTG AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGGCGAGCGCTCAGACCAGCCGGAGGAACCCCGCGGACGGTTCAGCTGTGAAATCGAA CATGAAAATCCTCGTGGCCTTGGCAGTCTTTTTTCTCGTCTCTACTCAACTGTTTGCAGA AGAAATCGGAGCCAACGATGATCTGAATTATTGGTCCGACTGGTCAGACAGCGACCAGAT AAAGGAGGAGCTGCCGGAGCCCTTTGAGCATCTTCTTCAGAGAATCGCGCGGAGACCCAA GCCTCAGCAGTTCTTCGGATTAATGGGCAAACGGGATGCTGGACATGGCCAGATCTCTCA TAAAAGGCATAAAACAGATTCCTTTGTTGGACTAATGGGCAAAAGAGCTTTAAATTCTGT GGCTTATGAAAGGAGTGCAATGCAGAATTATGAAAGAAGACGTAAATAAACTACCTAACG TATTATTTATCCAGCTTCATTTGTGTCAATGGCTGATGAAAGGTAAAATGAGACAGACGC TATGAAGAATAATTATTTATTTAATAATAATTGTTGTTTTGAGTTGAAAACTCAAAAAGT ATTTATTTTTCATATTGTGCCAAGATGTGTTGTAAAAGTGTGTTATAATTCTAACATGGC AACTCCCTCAGAAATAGAAATCAGTGGTAATTTCTCAACAAAGCAGTGTTCAATGAAGTG GTAGGAACCTATCAATGATACAGTCTCCAAAGAAAGAAATAATTTCTGTTTCTCAAGAGC AGTCATATCAGCGACGTGTGAAGAAAGGAAACTCACAGATATGCTGTGCTTCTCCATTTG TTTTCATGGTGAAAATGTACTGAGATTTGGTAGCAAACTGTGGTGTATCCCTGAAGCATG TTTCATGGTTTATGACTATATAGAGATGTTTTAAAAGTTTTAATGTGATTCTAAGGTCTT AATTTTATTGTACAATGTGTTGTGATAGTTAACATTTTAAATAAAAGAAAAAATATCTTG AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 52-185, gnl|bosTau2|chr4 (1948238-1948105) | |
| 52-185, gnl|canFam2|chr14 (25580110-25581755) | |
| 52-185, gnl|dasNov1|scaffold_7147 (26544-28122) | |
| 52-185, gnl|echTel1|scaffold_302937 (50421-48773) | |
| 52-185, gnl|hg17|chr7 (97005341-97006943) | |
| 52-185, gnl|Hg17|chr7 (97006566-97006699) | |
| 52-185, gnl|loxAfr1|scaffold_1886 (87031-85297) | |
| 52-185, gnl|mm7|chr6 (7507251-7508830) | |
| 52-185, gnl|Mm7|chr6 (7508490-7508623) | |
| 52-185, gnl|oryCun1|scaffold_105317 (5658-4343) | |
| 52-185, gnl|panTro1|chr6 (98638341-98639942) | |
| 52-185, gnl|rheMac2|chr3 (119514526-119512925) | |
| 52-185, gnl|rn3|chr4 (32767490-32769048) | |
| 356-962, gnl|bosTau2|chr4 (1940768-1940166) | |
| 356-962, gnl|canFam2|chr14 (25588375-25589019) | |
| 356-962, gnl|dasNov1|scaffold_7147 (34363-35025) | |
| 356-962, gnl|echTel1|scaffold_302937 (40225-39576) | |
| 356-962, gnl|galGal2|chr2 (23945863-23946599) | |
| 356-962, gnl|hg17|chr7 (97013823-97014489) | |
| 356-962, gnl|Hg17|chr7 (97013833-97014435) | |
| 356-962, gnl|loxAfr1|scaffold_1886 (77743-77079) | |
| 356-962, gnl|mm7|chr6 (7515259-7515915) | |
| 356-962, gnl|Mm7|chr6 (7515266-7515865) | |
| 356-962, gnl|oryCun1|scaffold_210679 (14980-14330) | |
| 356-962, gnl|panTro1|chr6 (98646818-98647482) | |
| 356-962, gnl|rheMac2|chr3 (119506059-119505400) | |
| 356-962, gnl|rn3|chr4 (32775565-32776222) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-185, gnl|bosTau2|chr4 (1948238-1948105) | |
| 52-185, gnl|canFam2|chr14 (25580110-25581755) | |
| 52-185, gnl|dasNov1|scaffold_7147 (26544-28122) | |
| 52-185, gnl|echTel1|scaffold_302937 (50421-48773) | |
| 52-185, gnl|hg17|chr7 (97005341-97006943) | |
| 52-185, gnl|Hg17|chr7 (97006566-97006699) | |
| 52-185, gnl|loxAfr1|scaffold_1886 (87031-85297) | |
| 52-185, gnl|mm7|chr6 (7507251-7508830) | |
| 52-185, gnl|Mm7|chr6 (7508490-7508623) | |
| 52-185, gnl|oryCun1|scaffold_105317 (5658-4343) | |
| 52-185, gnl|panTro1|chr6 (98638341-98639942) | |
| 52-185, gnl|rheMac2|chr3 (119514526-119512925) | |
| 52-185, gnl|rn3|chr4 (32767490-32769048) | |
| 356-962, gnl|bosTau2|chr4 (1940768-1940166) | |
| 356-962, gnl|canFam2|chr14 (25588375-25589019) | |
| 356-962, gnl|dasNov1|scaffold_7147 (34363-35025) | |
| 356-962, gnl|echTel1|scaffold_302937 (40225-39576) | |
| 356-962, gnl|galGal2|chr2 (23945863-23946599) | |
| 356-962, gnl|hg17|chr7 (97013823-97014489) | |
| 356-962, gnl|Hg17|chr7 (97013833-97014435) | |
| 356-962, gnl|loxAfr1|scaffold_1886 (77743-77079) | |
| 356-962, gnl|mm7|chr6 (7515259-7515915) | |
| 356-962, gnl|Mm7|chr6 (7515266-7515865) | |
| 356-962, gnl|oryCun1|scaffold_210679 (14980-14330) | |
| 356-962, gnl|panTro1|chr6 (98646818-98647482) | |
| 356-962, gnl|rheMac2|chr3 (119506059-119505400) | |
| 356-962, gnl|rn3|chr4 (32775565-32776222) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fhi (0.508733) | |
| spc (0.340097) | |
| fco (0.314416) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| sug (0.127291) | |
| ebs (0.118301) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.508733) | |
| spc (0.340097) | |
| fco (0.314416) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| sug (0.127291) | |
| ebs (0.118301) |