Non-Coding RNA Search

Ss1.1-Pig3-SRG8007E12.3

Sequence:


               
               GTCATCAGAAGTCAGCAGCAAAAAAGACAAGGCACTTCATGATTCTCTGGGACCGTTAAA
TTTTAAAATATGCAAAGAAAGACTCTTTTTTAAGGAAAGAAAGACCCTTATAATGACAAT
TCATGAGTGTTAGCTTTTTGGCGTGTTCTGAATGCCAGCTGCCTGTATTTGCTGCATTTG
TTTCATCGTTTATTTTCCTTTTCTCATGGTGGACATGCAGTTCACCTGTCTCCTTGCATA
ACACGGGGGCATCTGTACTTGAATAAGCAGCAGTTCTCAACTTCACAACAGATGCAGTGA
ACCGTGGCTGTATACGCATGCTCGTTGTGTGAAGGCTAGCCTAACAGAAACAGGGGTATC
AAACTAGCTGCTATGTGCAAACATCGTCTTTTTTTCCGAGGTGGAACCTCAAGAATGATT
TTGTTCTTGTATCTCATCTCAAAAAAAAAAAAAAACAATATTTTTTTTTTCCAAAAGATG
GCATATACCAAGTTAAAGACAGGGTATTATAAATCTAGAATAATTGGTGGTACATTATTG
AAATACAGAACTTTAGTGATAGTTGGGAGTAAGGGCTTTGATGCCAGCATCCTTGGATCA
GTAATGAACTTTATCCATAAAATATTTAAAGGTAAGTGGCGGCTGCTGTATTTAATAGAA
GCATATTTCATTAGACTAAAATTTGACTATGATACATTGAACAAAATGGAACTTTTTTTT
AAAATATAAAGATTTTTAATTCTGTGATTGCGTGTATGTGTGCTGAAACTGTAAAGTTTT
TATGATTCTAATATTAATAGCCCTGAAATGAAATTAAAAGGTTAATGAACATGATCCAGC
TTAAATGATCATTCCTTCCTGCGATGATTATTGGACTATTTTACTGTATATTTTAAAAAC
TAAAGAGAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATCAGAAGTCAGCAGCAAAAAAGACAAGGCACTTCATGATTCTCTGGGACCGTTAAA
TTTTAAAATATGCAAAGAAAGACTCTTTTTTAAGGAAAGAAAGACCCTTATAATGACAAT
TCATGAGTGTTAGCTTTTTGGCGTGTTCTGAATGCCAGCTGCCTGTATTTGCTGCATTTG
TTTCATCGTTTATTTTCCTTTTCTCATGGTGGACATGCAGTTCACCTGTCTCCTTGCATA
ACACGGGGGCATCTGTACTTGAATAAGCAGCAGTTCTCAACTTCACAACAGATGCAGTGA
ACCGTGGCTGTATACGCATGCTCGTTGTGTGAAGGCTAGCCTAACAGAAACAGGGGTATC
AAACTAGCTGCTATGTGCAAACATCGTCTTTTTTTCCGAGGTGGAACCTCAAGAATGATT
TTGTTCTTGTATCTCATCTCAAAAAAAAAAAAAAACAATATTTTTTTTTTCCAAAAGATG
GCATATACCAAGTTAAAGACAGGGTATTATAAATCTAGAATAATTGGTGGTACATTATTG
AAATACAGAACTTTAGTGATAGTTGGGAGTAAGGGCTTTGATGCCAGCATCCTTGGATCA
GTAATGAACTTTATCCATAAAATATTTAAAGGTAAGTGGCGGCTGCTGTATTTAATAGAA
GCATATTTCATTAGACTAAAATTTGACTATGATACATTGAACAAAATGGAACTTTTTTTT
AAAATATAAAGATTTTTAATTCTGTGATTGCGTGTATGTGTGCTGAAACTGTAAAGTTTT
TATGATTCTAATATTAATAGCCCTGAAATGAAATTAAAAGGTTAATGAACATGATCCAGC
TTAAATGATCATTCCTTCCTGCGATGATTATTGGACTATTTTACTGTATATTTTAAAAAC
TAAAGAGAAATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-911, gnl|bosTau2|chr9 (32542167-32543073)
               

               
               1-911, gnl|Hg17|chr6 (91282982-91282051)
               

               
               1-911, gnl|Mm7|chr4 (32298041-32298896)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-911, gnl|bosTau2|chr9 (32542167-32543073)
               

               
               1-911, gnl|Hg17|chr6 (91282982-91282051)
               

               
               1-911, gnl|Mm7|chr4 (32298041-32298896)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               ski (0.146735)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               spc (0.113366)

	1-911, gnl\|bosTau2\|chr9 (32542167-32543073)
	1-911, gnl\|Hg17\|chr6 (91282982-91282051)
	1-911, gnl\|Mm7\|chr4 (32298041-32298896)