Non-Coding RNA Search

Ss1.1-Pig3-SRG8007J03.3.5

Sequence:


               
               GGCAAACTGCGACCTGTCCGGGCAGCTCCCCCTCCGCCCACGCAGAACCACCGAAGGCCG
GCAGAGAGGATCGAGGACGTGGAAGTCACGCTGGTGTGATGGCGTGCAGTCCAGGCCAGG
CTCGGAGTCGGGCCAGTCTTACTTTTCAGGCACCTTTGCATGATGACGACGTGAGCAGAG
CAAGGACAAGGATCATACGTGACTGGCTGGCCTGGTGGACTCCTCCCACGTTTTGAATAT
GTTGTGCCTTTCTTGGTTGTCATCTTCTGTGTCATCTCTCCGACCACAGCACAAATCTTA
GCAGGCCCTAGAGGCAGAGAGGGGGCAGCCCTCGTGCCTAACAGTGGCCTGTTTTTATAT
GAGACTCGAGACCAGGCCTCATTCAGGGCCCAGTCACAGAGATACTGACCGTGTACTCTC
GTACAGTATATTACTGTGGCCACAGGGATGTGGCAAAGATTCTCATCTTTCTTCAAGTGG
CTTTTGCTCGTCTGGTTGAGTTTAATCAGACCGTGTTGGCGGCATAAGGAAGCAAAAGGA
GGGGTTTCAGGAGAGGCTGGCTCCTCCCCCAGTTAGTCCTCAGACTAAGAACGTGAGACC
TGCTGCAAAGACGTGGACTGCCCTGCGCTTAGCGCCGTTGCATTAACGCGCACCTCTCCC
ACAACTAACCGATTCAAAACCGTAACAGTGTCCTTTGTCTGGATGTTTATGCCGTTCATC
TAGTATTAGTGGAGCTAACACGGAGGGCTGGCCTGGTGGCCAAATCTCGTCCATCACATA
GATAAATAGAAAGGAGGCTGCGGCTAAAGTGGAAATGGAGCTTCCAGATCTTGAAACGAG
CCGATTTAATGTTCTGTTTCTATTTGGGTATTTTTCATCTTAATTTTTGCAGCATATACT
CTTCTGACCAGTATCCTTAGAACCTGAATGTCTAGATAAACTGGGGACACACACTTGCCT
TGTTGAGCTTCTCTGCTCGGGAGGCCCGTAGCATTATTTTCTTCCCAAGCCAGTCAGCTG
GCCCAGACCAGCGGCCACCCACTGCATAAAATGCAGCTTCCCAGGTCCACCAACCTGACC
TTTCCCTGAGAGGAAGAACCTGAGGCTCATGGAGGAAACCAGCTTCCTGTGCCGAAGAAC
GTGAGCGTCACACACCCTGCACAGGTGCCCACCCACGAGGACAAGCGACCCAGGAGCCGC
CTTCCCTGCGGGCGGATGGGCGGGCAGGCGACCCGGCACCCCGTGCCCAGGCATCCCGGT
GTGAGCCCCTGGTGGCCCTCCCCTCCCAGGGAAGGTGGGAGCGCCCTGCTGAGGGACTAA
GGGATGTTTGCCAGTTGCTTTGTCTTTTTTCTTTCTTTCTTTTTTTTTTTAAAGAAATCA
GATTTGCAGAATTTAATCCAAAAGTTGTCTTAACGCTTTGAAAATTCCATCCCTCCTAAG
AATCTTTAAACACTTGAAATGCTCGCCAAATGTCCCCATGGGATTTTTGACCAAAAGTAA
GGTCATAGCTGAGGAAATTTTCAGTTACTCATTTGATCAGTGACAATATTCATCGATAAT
CTTCTCTGTGATTTGAGGATTTTTGTTTCAGTTTTTTGCATTTCTTAACCTGTTGATCTA
TTTGAGGTCTTTTTGTGTTTATCAAACTTATTCTTAAGTTTAAAAAAGAAACTGAAAGAG
TGGCTTTTTTTTAAGATTTTAAAGTTCGTTGACAAGTTAAAAAGCCTTTAGAGCACTTTA
AAAATCTTCAGAGTGCTCAGGTCGGGCCACTCCTGCTACCCAGTCTTGTATTCTCTCTTT
AGCTAGCAAAGTTGTCCTCGAACCTGGGTTTTCCACATTCTCCGAGGGTTATTTGAAATC
TTTGGTTATATTTTAAAATATTTTTTGGAAGAGCTGCTAATTTTATTTAAAAGAAAAATA
CAAAGTTGTAAAAATATGCCTCCTTTTTAAAAAGCACCCCTCCCTCCAGGACATGTAATC
CAGAGTCACAGGGCTGGGCTCAGAGGGAGCATCTCTGTGCCGATGTGCTTTCTTTACAGT
GGCTGTAAAAACTTTGTATTTATTATGTATAAAATGTTGGATAATAAAAAATGGAATTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAACTGCGACCTGTCCGGGCAGCTCCCCCTCCGCCCACGCAGAACCACCGAAGGCCG
GCAGAGAGGATCGAGGACGTGGAAGTCACGCTGGTGTGATGGCGTGCAGTCCAGGCCAGG
CTCGGAGTCGGGCCAGTCTTACTTTTCAGGCACCTTTGCATGATGACGACGTGAGCAGAG
CAAGGACAAGGATCATACGTGACTGGCTGGCCTGGTGGACTCCTCCCACGTTTTGAATAT
GTTGTGCCTTTCTTGGTTGTCATCTTCTGTGTCATCTCTCCGACCACAGCACAAATCTTA
GCAGGCCCTAGAGGCAGAGAGGGGGCAGCCCTCGTGCCTAACAGTGGCCTGTTTTTATAT
GAGACTCGAGACCAGGCCTCATTCAGGGCCCAGTCACAGAGATACTGACCGTGTACTCTC
GTACAGTATATTACTGTGGCCACAGGGATGTGGCAAAGATTCTCATCTTTCTTCAAGTGG
CTTTTGCTCGTCTGGTTGAGTTTAATCAGACCGTGTTGGCGGCATAAGGAAGCAAAAGGA
GGGGTTTCAGGAGAGGCTGGCTCCTCCCCCAGTTAGTCCTCAGACTAAGAACGTGAGACC
TGCTGCAAAGACGTGGACTGCCCTGCGCTTAGCGCCGTTGCATTAACGCGCACCTCTCCC
ACAACTAACCGATTCAAAACCGTAACAGTGTCCTTTGTCTGGATGTTTATGCCGTTCATC
TAGTATTAGTGGAGCTAACACGGAGGGCTGGCCTGGTGGCCAAATCTCGTCCATCACATA
GATAAATAGAAAGGAGGCTGCGGCTAAAGTGGAAATGGAGCTTCCAGATCTTGAAACGAG
CCGATTTAATGTTCTGTTTCTATTTGGGTATTTTTCATCTTAATTTTTGCAGCATATACT
CTTCTGACCAGTATCCTTAGAACCTGAATGTCTAGATAAACTGGGGACACACACTTGCCT
TGTTGAGCTTCTCTGCTCGGGAGGCCCGTAGCATTATTTTCTTCCCAAGCCAGTCAGCTG
GCCCAGACCAGCGGCCACCCACTGCATAAAATGCAGCTTCCCAGGTCCACCAACCTGACC
TTTCCCTGAGAGGAAGAACCTGAGGCTCATGGAGGAAACCAGCTTCCTGTGCCGAAGAAC
GTGAGCGTCACACACCCTGCACAGGTGCCCACCCACGAGGACAAGCGACCCAGGAGCCGC
CTTCCCTGCGGGCGGATGGGCGGGCAGGCGACCCGGCACCCCGTGCCCAGGCATCCCGGT
GTGAGCCCCTGGTGGCCCTCCCCTCCCAGGGAAGGTGGGAGCGCCCTGCTGAGGGACTAA
GGGATGTTTGCCAGTTGCTTTGTCTTTTTTCTTTCTTTCTTTTTTTTTTTAAAGAAATCA
GATTTGCAGAATTTAATCCAAAAGTTGTCTTAACGCTTTGAAAATTCCATCCCTCCTAAG
AATCTTTAAACACTTGAAATGCTCGCCAAATGTCCCCATGGGATTTTTGACCAAAAGTAA
GGTCATAGCTGAGGAAATTTTCAGTTACTCATTTGATCAGTGACAATATTCATCGATAAT
CTTCTCTGTGATTTGAGGATTTTTGTTTCAGTTTTTTGCATTTCTTAACCTGTTGATCTA
TTTGAGGTCTTTTTGTGTTTATCAAACTTATTCTTAAGTTTAAAAAAGAAACTGAAAGAG
TGGCTTTTTTTTAAGATTTTAAAGTTCGTTGACAAGTTAAAAAGCCTTTAGAGCACTTTA
AAAATCTTCAGAGTGCTCAGGTCGGGCCACTCCTGCTACCCAGTCTTGTATTCTCTCTTT
AGCTAGCAAAGTTGTCCTCGAACCTGGGTTTTCCACATTCTCCGAGGGTTATTTGAAATC
TTTGGTTATATTTTAAAATATTTTTTGGAAGAGCTGCTAATTTTATTTAAAAGAAAAATA
CAAAGTTGTAAAAATATGCCTCCTTTTTAAAAAGCACCCCTCCCTCCAGGACATGTAATC
CAGAGTCACAGGGCTGGGCTCAGAGGGAGCATCTCTGTGCCGATGTGCTTTCTTTACAGT
GGCTGTAAAAACTTTGTATTTATTATGTATAAAATGTTGGATAATAAAAAATGGAATTAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               410-601, + strand, RNAz p=0.769208

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               410-601, + strand, RNAz p=0.769208

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK128381, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK128381, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-1026, gnl|bosTau2|chr15 (33813086-33814020)
               

               
               107-1026, gnl|Hg17|chr11 (72227455-72226526)
               

               
               107-1026, gnl|Mm7|chr7 (97328807-97329675)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-1026, gnl|bosTau2|chr15 (33813086-33814020)
               

               
               107-1026, gnl|Hg17|chr11 (72227455-72226526)
               

               
               107-1026, gnl|Mm7|chr7 (97328807-97329675)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ece (0.917221)
               

               
               pro (0.512033)
               

               
               fcc (0.39557)
               

               
               clu (0.358938)
               

               
               fbs (0.350693)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.917221)
               

               
               pro (0.512033)
               

               
               fcc (0.39557)
               

               
               clu (0.358938)
               

               
               fbs (0.350693)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	107-1026, gnl\|bosTau2\|chr15 (33813086-33814020)
	107-1026, gnl\|Hg17\|chr11 (72227455-72226526)
	107-1026, gnl\|Mm7\|chr7 (97328807-97329675)

	ece (0.917221)
	pro (0.512033)
	fcc (0.39557)
	clu (0.358938)
	fbs (0.350693)
	mgp (0.230681)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	tbr (0.154178)
	lnt (0.142308)
	thg (0.126791)
	ese (0.126502)
	eru (0.120048)
	cbl (0.114797)
	spc (0.113366)