Non-Coding RNA Search

Ss1.1-Pig3-SRG8007J05.3

Sequence:


               
               CGTCCCCACATACCTTCCAAGGTTAGCTCATAACTGCAGGGCTGCAGAGATGAGCCATAG
ACTGTGCGTAACCTCCCCTTCACCATCCTCGTCGCCACCTTAGGTCATGTTAGGGGTCTC
GCCCTCCGGGTGATTTGGAAGTGGAGTTTCTTGGCAGCCATCATACAGGTCCCAGCACCC
TGTCATGCTTCCTAACCAAGGGTGTGTGACTCTCCAAGAGAGCCGTACTGCCTGCTGACG
TGAACCAGTACCCAGAGAGGCAACTGTGAGCCATCCTCGCTTTCACTTACTGTTTAGCTA
AGCTCTTACACCACAGAAGGGTTTCTCAAACCTCTGGTTATATCAGAGTTCATGAGAAAG
GTAACAGTCAAACCAAATCAAACAAATTGAACTTTACATTTCTTAATGAGCTTCTGAGAG
CAAATTAAGATTGAAAAGAAGTTTGAAAGTATTTGGCAGCATAATTCCTAAAAGGAATGG
CTTTGATCGACAATTTTCAGAAAGGATTATAAAGAAGCTGGACAGCAGGTCTGTGGCAGA
GATATGGACCTACTTCAGACCAGACTGCCCAGCTGAACATTTGGATACAGACCCTATTCT
GGACTTGGTATACCTGCTAGAGTCCATAAAAATCTGTGCTTGTTTTAGGAAACAATTCCC
CCTCCCCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCCCCACATACCTTCCAAGGTTAGCTCATAACTGCAGGGCTGCAGAGATGAGCCATAG
ACTGTGCGTAACCTCCCCTTCACCATCCTCGTCGCCACCTTAGGTCATGTTAGGGGTCTC
GCCCTCCGGGTGATTTGGAAGTGGAGTTTCTTGGCAGCCATCATACAGGTCCCAGCACCC
TGTCATGCTTCCTAACCAAGGGTGTGTGACTCTCCAAGAGAGCCGTACTGCCTGCTGACG
TGAACCAGTACCCAGAGAGGCAACTGTGAGCCATCCTCGCTTTCACTTACTGTTTAGCTA
AGCTCTTACACCACAGAAGGGTTTCTCAAACCTCTGGTTATATCAGAGTTCATGAGAAAG
GTAACAGTCAAACCAAATCAAACAAATTGAACTTTACATTTCTTAATGAGCTTCTGAGAG
CAAATTAAGATTGAAAAGAAGTTTGAAAGTATTTGGCAGCATAATTCCTAAAAGGAATGG
CTTTGATCGACAATTTTCAGAAAGGATTATAAAGAAGCTGGACAGCAGGTCTGTGGCAGA
GATATGGACCTACTTCAGACCAGACTGCCCAGCTGAACATTTGGATACAGACCCTATTCT
GGACTTGGTATACCTGCTAGAGTCCATAAAAATCTGTGCTTGTTTTAGGAAACAATTCCC
CCTCCCCCCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               465-620, no strand, RNAz p=0.867279

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               465-620, no strand, RNAz p=0.867279

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-662, gnl|bosTau2|chr1 (30129353-30128688)
               

               
               3-662, gnl|Hg17|chr3 (121026627-121025958)
               

               
               3-662, gnl|Mm7|chr16 (37949102-37949734)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-662, gnl|bosTau2|chr1 (30129353-30128688)
               

               
               3-662, gnl|Hg17|chr3 (121026627-121025958)
               

               
               3-662, gnl|Mm7|chr16 (37949102-37949734)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hea (0.204499)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)

	3-662, gnl\|bosTau2\|chr1 (30129353-30128688)
	3-662, gnl\|Hg17\|chr3 (121026627-121025958)
	3-662, gnl\|Mm7\|chr16 (37949102-37949734)