Non-Coding RNA Search

Ss1.1-Pig3-SRG8007J14.3

Sequence:


               
               AGTTGGAAGCTGTATCAGAAAAGTGCCAAGTCAGTCGCCCCCTGTGCTGTCACAGCTGAG
CAGCTGGGCCCCGTCCGCAGTCTCAGATTCCCGAAAGCTGACCCTGACAGTGACCGTGAG
GGCAGTTAAATCGTCATCCGGTGGTTTGTGCTTTCTTTAAAGAAATGTAGTAATTCTGTA
ATCTTCCTCTTCAACACAGGTTGACCCCCTGTGTACCTTCTGAAGGGATTCCTTAGAAGG
CGTTTTTGTGCACAGTCATCCCTAAGTATTCTTCATGCAGCACAAATGGATGAAAAATAT
ACAAATTTGCAAAGCTATCATAAGCATATAGTTGATGTGCTGAGTTCTTTTTTTTTTAAA
GCAACCTTCAGAAGGATTCTTCCGTGGGTAAACCTCCCATCAGAACCCCTGAAGTTTTTA
GCTTCAGTGGGAATTTTAGTAAAGACTAGGAGAGAAGTCTTAATACATGAATAACTTTTC
AAAGAGAAAGTGACTCCTCTTTGTTATCTGATGCAAGTTCCTCTTCATTTAGAAGCATTT
CTCTGGGTCCTGGGCGATCAGATACCAATTGACATCTTCCTTAATTTTTGTTACTAGTGA
GACAAATCCTATGTATAAGGAGAGGCTCATCAGCAACATTTTTGTTGCCTTCATTAAATC
ACTGAAAAGGAGCTTATTTTCTTGTCAAATAGTATGAGAAAACCCAGGCCATTTCTAGAA
GAGGTAAGCATTAAGGTACCGGGTTAAGAAAATGACAAGAAAAAAGCTGCCTCAAAAAGG
CAAAACATCGGGTATTGCATTTTCTCTTCGGTAATGGAATGGCTTGAGAACTTTCTTTTA
GTTCTGACTTGCTTTGGGAAATGTGGACCTTTGGCACTGATAACAATAACACTTTGCACA
ATAACCCCAACTTTTTTTGAAACCTGAATGAAAAATACGCCAAAAAAGAAACTGTGTCTG
TTTGATATGTGTTTAAAAAAATAATCAAATTTAGTACCAAGGTGTCCATCCGTAACTGGC
TACCTGGACATCGTTTAGACGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGGAAGCTGTATCAGAAAAGTGCCAAGTCAGTCGCCCCCTGTGCTGTCACAGCTGAG
CAGCTGGGCCCCGTCCGCAGTCTCAGATTCCCGAAAGCTGACCCTGACAGTGACCGTGAG
GGCAGTTAAATCGTCATCCGGTGGTTTGTGCTTTCTTTAAAGAAATGTAGTAATTCTGTA
ATCTTCCTCTTCAACACAGGTTGACCCCCTGTGTACCTTCTGAAGGGATTCCTTAGAAGG
CGTTTTTGTGCACAGTCATCCCTAAGTATTCTTCATGCAGCACAAATGGATGAAAAATAT
ACAAATTTGCAAAGCTATCATAAGCATATAGTTGATGTGCTGAGTTCTTTTTTTTTTAAA
GCAACCTTCAGAAGGATTCTTCCGTGGGTAAACCTCCCATCAGAACCCCTGAAGTTTTTA
GCTTCAGTGGGAATTTTAGTAAAGACTAGGAGAGAAGTCTTAATACATGAATAACTTTTC
AAAGAGAAAGTGACTCCTCTTTGTTATCTGATGCAAGTTCCTCTTCATTTAGAAGCATTT
CTCTGGGTCCTGGGCGATCAGATACCAATTGACATCTTCCTTAATTTTTGTTACTAGTGA
GACAAATCCTATGTATAAGGAGAGGCTCATCAGCAACATTTTTGTTGCCTTCATTAAATC
ACTGAAAAGGAGCTTATTTTCTTGTCAAATAGTATGAGAAAACCCAGGCCATTTCTAGAA
GAGGTAAGCATTAAGGTACCGGGTTAAGAAAATGACAAGAAAAAAGCTGCCTCAAAAAGG
CAAAACATCGGGTATTGCATTTTCTCTTCGGTAATGGAATGGCTTGAGAACTTTCTTTTA
GTTCTGACTTGCTTTGGGAAATGTGGACCTTTGGCACTGATAACAATAACACTTTGCACA
ATAACCCCAACTTTTTTTGAAACCTGAATGAAAAATACGCCAAAAAAGAAACTGTGTCTG
TTTGATATGTGTTTAAAAAAATAATCAAATTTAGTACCAAGGTGTCCATCCGTAACTGGC
TACCTGGACATCGTTTAGACGTTG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-920, gnl|bosTau2|chr8 (48822571-48823509)
               

               
               1-920, gnl|Hg17|chr9 (88847772-88849133)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-920, gnl|bosTau2|chr8 (48822571-48823509)
               

               
               1-920, gnl|Hg17|chr9 (88847772-88849133)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               rec (0.346141)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)

	1-920, gnl\|bosTau2\|chr8 (48822571-48823509)
	1-920, gnl\|Hg17\|chr9 (88847772-88849133)

	rec (0.346141)
	gul (0.177588)
	cki (0.165235)
	fat (0.147427)
	ski (0.146735)
	lnt (0.142308)
	ssp (0.13552)