Non-Coding RNA Search

Ss1.1-Pig3-SRG8007K15.3

Sequence:


               
               CTGGTTTCCTGGAGGCTTAATGCGAAGTGGGCAACGAAAGGTCTTCGGAGGGACTCACAC
TTGCGCGTCCCGCGGAAGCGTCGGGGAGCGATGCCAAAGCTGCGTTGGGAACGGTGGAGT
CCGGGGTTCGGAGGAGCATCTAAGGGGAGCAGGGATGGAATCAAGTCACTGCAACCAGGG
TACTGGGGGGAAACGAAGAAGTCACGGAGAATTTGCCCTCGGAGAGAGGTGGGCCTTACC
CAGGATCTAGGGTGGGCAACAATGTGCAGTGTGGATCAGAGAGGAGGAAACGCCGCAATG
TGAGGGACTGGTCGTGAGAAAGGACCAAAAGTCCCTGTTCACCACAGCAAGGCCCAGAGT
TGCTAATCTGGATTCTCCGATTACAGACCTGATCTTTCAGAGCTTCTTTCTCCACCGCCA
GCCTTGTCATTTCAGCATTCTGCCTTTCCTTTTGAGGAGGAAGATCAACCAAGTCCCAGG
GCCTTTGCTCAATCCAGAGCTGCGCCATGGCAGAGACTGGGGAAGAGGAGACAGTGTCAG
CGGAGGCCTCAGGGTTCTCAGACTTGAGTGACTCAGAGTTTCTGGACCTAGAAGATACGC
AAGAGTCAAGTATGTCACTTAGCGAGCCTGGCCCTTCTTCAGCACTCTCTGAGAAGCATG
GCAATCTTATAAGCTTACCTACATGGAAAGGAGGATTGGATGTCTCATCACCTATGGAGC
GATTCCATCTTAAATATTTGTATGTCACTGACCTCTGTACTCAGAACTGGTGCGAACAGC
AAATGGTGTATGAAAAAGAGCTTCCTGGTTTCTTGACACCTGAGAAGTCAGCTGTTTTGG
ACACTGGTGCTAGTATCCACCTAGCTAGAGAACTAGAAGTTCATGACCTTGTGACTGTCC
CTGTCACCACGAAAGAAGATGCTTGGGCAATTAAGTTTCTGAACATACTGTCAATGATTC
CTACCCTGCAGTCAGAAGGGCGCATCAGAGAGTTCCCAGTGTTTGGAGAAGTAGAGGGTG
TGTTTCTTGTTGGAGTGATTGATGAGCTGCACTATACAGCCAGGGGAGAGCTGGAACTGG
CGGAACTCAAGACACGCAGGCGCCCCGTGCTCCCCATGAATGCTCAAAAAAATAAAGACC
GTTTTCAAGTCAACCTGTACAAATACATCTTTGATGCCATGGTACAAGGGAAAGTGACCA
CTGCTAGCCTAATCTACCACACAAAACTGCATCCAGAAAAGCCACTGGGACCTTCAGTGC
TGAGGCATGCCCGGCAGGGAGGCTTCTCTGTGAAGTCCTTGGGTGACCTCATGGAGCTGG
TCTACTTGACTCTAACACTGTCTGACCTCCCAGTTATCGATAGCCTGAAGATTGAGTATA
TCCACCAAGAGACTGCCACTGTGCTGGGTACAGAGATAGTGGCCTTTGAAGAGAAGGAGG
TGAGACGTAAAGTGCAGCACTATTTGGCCTACTGGATGGGCCACCGAGAGCCTCAAGGGG
TTGATGTAGAGGAGGCTTGGAAATGCCGGGCATGCAACTATGCAGATATCTGTGAGTGGA
GGAAGGGCAGTAGGTTGCCCAATTCCGTGCTAGAGCCTCAAGTCAAAATAGCCAAATGAA
TGGAAGATGTGCCTTCAGGAACTTTGATCTTTCCTGCTCCTGACGTACTCCCCAGAGTGA
AAAAGGACCAGTCTCTGAGCTTGACTTTCATGGAGAGTGTTCCTGTTGTGGGTCTTTCCG
TGTTTCCTCATCCTCTCATCTACCCAGATCCAGGACCAAGGCTCAGGGGTGAGCGGAGAG
CTGGGATCCTACTGCCCCCGGAGCTTTGTGGTGCGTTGTCAGGGCAGATGCTCATCATGG
CTGGAGCAAAGGTACCTTCCGCGATCATCGCTTTCCTGAGGAGATTCTTCAGTTTCTTTT
AAGTCTCTTCCCCATTCTTTTCTCAATCAAGTTTTCTACATCTTATATAATGAAATAAAA
TGAAACACCGTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTTTCCTGGAGGCTTAATGCGAAGTGGGCAACGAAAGGTCTTCGGAGGGACTCACAC
TTGCGCGTCCCGCGGAAGCGTCGGGGAGCGATGCCAAAGCTGCGTTGGGAACGGTGGAGT
CCGGGGTTCGGAGGAGCATCTAAGGGGAGCAGGGATGGAATCAAGTCACTGCAACCAGGG
TACTGGGGGGAAACGAAGAAGTCACGGAGAATTTGCCCTCGGAGAGAGGTGGGCCTTACC
CAGGATCTAGGGTGGGCAACAATGTGCAGTGTGGATCAGAGAGGAGGAAACGCCGCAATG
TGAGGGACTGGTCGTGAGAAAGGACCAAAAGTCCCTGTTCACCACAGCAAGGCCCAGAGT
TGCTAATCTGGATTCTCCGATTACAGACCTGATCTTTCAGAGCTTCTTTCTCCACCGCCA
GCCTTGTCATTTCAGCATTCTGCCTTTCCTTTTGAGGAGGAAGATCAACCAAGTCCCAGG
GCCTTTGCTCAATCCAGAGCTGCGCCATGGCAGAGACTGGGGAAGAGGAGACAGTGTCAG
CGGAGGCCTCAGGGTTCTCAGACTTGAGTGACTCAGAGTTTCTGGACCTAGAAGATACGC
AAGAGTCAAGTATGTCACTTAGCGAGCCTGGCCCTTCTTCAGCACTCTCTGAGAAGCATG
GCAATCTTATAAGCTTACCTACATGGAAAGGAGGATTGGATGTCTCATCACCTATGGAGC
GATTCCATCTTAAATATTTGTATGTCACTGACCTCTGTACTCAGAACTGGTGCGAACAGC
AAATGGTGTATGAAAAAGAGCTTCCTGGTTTCTTGACACCTGAGAAGTCAGCTGTTTTGG
ACACTGGTGCTAGTATCCACCTAGCTAGAGAACTAGAAGTTCATGACCTTGTGACTGTCC
CTGTCACCACGAAAGAAGATGCTTGGGCAATTAAGTTTCTGAACATACTGTCAATGATTC
CTACCCTGCAGTCAGAAGGGCGCATCAGAGAGTTCCCAGTGTTTGGAGAAGTAGAGGGTG
TGTTTCTTGTTGGAGTGATTGATGAGCTGCACTATACAGCCAGGGGAGAGCTGGAACTGG
CGGAACTCAAGACACGCAGGCGCCCCGTGCTCCCCATGAATGCTCAAAAAAATAAAGACC
GTTTTCAAGTCAACCTGTACAAATACATCTTTGATGCCATGGTACAAGGGAAAGTGACCA
CTGCTAGCCTAATCTACCACACAAAACTGCATCCAGAAAAGCCACTGGGACCTTCAGTGC
TGAGGCATGCCCGGCAGGGAGGCTTCTCTGTGAAGTCCTTGGGTGACCTCATGGAGCTGG
TCTACTTGACTCTAACACTGTCTGACCTCCCAGTTATCGATAGCCTGAAGATTGAGTATA
TCCACCAAGAGACTGCCACTGTGCTGGGTACAGAGATAGTGGCCTTTGAAGAGAAGGAGG
TGAGACGTAAAGTGCAGCACTATTTGGCCTACTGGATGGGCCACCGAGAGCCTCAAGGGG
TTGATGTAGAGGAGGCTTGGAAATGCCGGGCATGCAACTATGCAGATATCTGTGAGTGGA
GGAAGGGCAGTAGGTTGCCCAATTCCGTGCTAGAGCCTCAAGTCAAAATAGCCAAATGAA
TGGAAGATGTGCCTTCAGGAACTTTGATCTTTCCTGCTCCTGACGTACTCCCCAGAGTGA
AAAAGGACCAGTCTCTGAGCTTGACTTTCATGGAGAGTGTTCCTGTTGTGGGTCTTTCCG
TGTTTCCTCATCCTCTCATCTACCCAGATCCAGGACCAAGGCTCAGGGGTGAGCGGAGAG
CTGGGATCCTACTGCCCCCGGAGCTTTGTGGTGCGTTGTCAGGGCAGATGCTCATCATGG
CTGGAGCAAAGGTACCTTCCGCGATCATCGCTTTCCTGAGGAGATTCTTCAGTTTCTTTT
AAGTCTCTTCCCCATTCTTTTCTCAATCAAGTTTTCTACATCTTATATAATGAAATAAAA
TGAAACACCGTCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57096552|ref|XP_532542.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57096552|ref|XP_532542.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1508-1627, + strand, RNAz p=0.518732

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1508-1627, + strand, RNAz p=0.518732

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_022774, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_022774, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               145-480, gnl|bosTau2|chr3 (68060909-68061245)
               

               
               145-480, gnl|Hg17|chr1 (40644215-40644556)
               


               
               481-1960, gnl|bosTau2|chr3 (68070135-68071609)
               

               
               481-1960, gnl|Hg17|chr1 (40649281-40650772)
               

               
               481-1960, gnl|Mm7|chr4 (120362673-120361209)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-480, gnl|bosTau2|chr3 (68060909-68061245)
               

               
               145-480, gnl|Hg17|chr1 (40644215-40644556)
               


               
               481-1960, gnl|bosTau2|chr3 (68070135-68071609)
               

               
               481-1960, gnl|Hg17|chr1 (40649281-40650772)
               

               
               481-1960, gnl|Mm7|chr4 (120362673-120361209)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               clu (0.837521)
               

               
               pty (0.428143)
               

               
               eep (0.245128)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.837521)
               

               
               pty (0.428143)
               

               
               eep (0.245128)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	145-480, gnl\|bosTau2\|chr3 (68060909-68061245)
	145-480, gnl\|Hg17\|chr1 (40644215-40644556)

	481-1960, gnl\|bosTau2\|chr3 (68070135-68071609)
	481-1960, gnl\|Hg17\|chr1 (40649281-40650772)
	481-1960, gnl\|Mm7\|chr4 (120362673-120361209)

	clu (0.837521)
	pty (0.428143)
	eep (0.245128)
	col (0.195008)
	nlu (0.191681)
	eye (0.170503)
	tbr (0.154178)
	med (0.116252)
	jej (0.0989218)