Non-Coding RNA Search

Ss1.1-Pig3-SRG8007L14.3

Sequence:


               
               CCTTCCGGGAGAGCGGCTTGGCTCGCTGCAGCCTTGTGGACTTCCATGGCACCGTGCTCT
ATGACAAGTTCATCCGGCCTGAGGGCGAGATCACTGACTACAGAACCCCAGTCAGCGGAA
TCACAGCTCGGAACATGGAGGGGGCCACCCCGTTCGCCGTGGCCAGGCTGGAGATCCTGC
AGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCAAGGCGCTGA
AGGAGAACATGAGCAACTATACCATCTACGACACCGCCCAGGATAGGCTGCTGTGGCGCG
AGGCTGACCTGCACTACTGCCGACGCGTTTCCCTCCGCCTGCTGAGCCAGCGCCTGCTCG
GGCGGCGCATCCAGGACAGTGTGTTGGGACACAACTCGGTGGAAGATGCCAGGGCAACAA
TGGAACTTTACCGACTCTCCAGAAGAATTCGAGAACAATGAGGGCTGCCTGTCAGGTGCA
CCCTCCCCAAGGACTAGAGGACTTCATCTCTTCAAGACAAAAACTCCCTTACTTTTGGAA
AATGCATTTTTAACAGTAAAATTTCTCTATATTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCCGGGAGAGCGGCTTGGCTCGCTGCAGCCTTGTGGACTTCCATGGCACCGTGCTCT
ATGACAAGTTCATCCGGCCTGAGGGCGAGATCACTGACTACAGAACCCCAGTCAGCGGAA
TCACAGCTCGGAACATGGAGGGGGCCACCCCGTTCGCCGTGGCCAGGCTGGAGATCCTGC
AGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCAAGGCGCTGA
AGGAGAACATGAGCAACTATACCATCTACGACACCGCCCAGGATAGGCTGCTGTGGCGCG
AGGCTGACCTGCACTACTGCCGACGCGTTTCCCTCCGCCTGCTGAGCCAGCGCCTGCTCG
GGCGGCGCATCCAGGACAGTGTGTTGGGACACAACTCGGTGGAAGATGCCAGGGCAACAA
TGGAACTTTACCGACTCTCCAGAAGAATTCGAGAACAATGAGGGCTGCCTGTCAGGTGCA
CCCTCCCCAAGGACTAGAGGACTTCATCTCTTCAAGACAAAAACTCCCTTACTTTTGGAA
AATGCATTTTTAACAGTAAAATTTCTCTATATTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57012885|sp|Q66UW5|IS20_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57012885|sp|Q66UW5|IS20_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               172-375, gnl|bosTau2|chr21 (14702257-14702460)
               

               
               172-375, gnl|Hg17|chr15 (86996343-86996546)
               

               
               172-375, gnl|Mm7|chr7 (74779727-74779930)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-375, gnl|bosTau2|chr21 (14702257-14702460)
               

               
               172-375, gnl|Hg17|chr15 (86996343-86996546)
               

               
               172-375, gnl|Mm7|chr7 (74779727-74779930)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ill (0.351185)
               

               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               csp (0.161186)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               csp (0.161186)

	172-375, gnl\|bosTau2\|chr21 (14702257-14702460)
	172-375, gnl\|Hg17\|chr15 (86996343-86996546)
	172-375, gnl\|Mm7\|chr7 (74779727-74779930)