Ss1.1-Pig3-SRG8007M13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGGAGCGCAACCCCCTTGAGGAGGTGTCTGGGGAGAGGATGGAGATGCAATGGCCATT CTCGGACAGGCAACGGCGGCGGCTAAGCAGCAGCTTCCTCTGAGCAGATGCTGGTGTCCT GTGTTTCCTGCAGATGTGGAACTTGTAATATTTTTTGGATTTCTGCACCAGGAGGTGGAA CCAGCCCCTCTGAAGACCTTATCCTCTAGGTCCAAGACAGTCTGATGCTGGCAGACAAGC CTTTCTTTCTGGTGCTGGAGGAAAATGGCACAACTGTAGAGACAGAAAAGTATTTCCAAT CCCTGGCAGATGACACCGTGTTCATGGTTCTTCATAAGGGGCAGAAATGGCAGCCCCCAT CACAAGCAGGTGAAATCCCACCTTTCCCTCCTGGTGAATCTTCTATTACTTCTTTACAGC TCGTCACTCACAACTCCCGTACTTTCTTCAATTCCAATGGGCTCCTCACTCTTCTCTCTC TCTCTCTCTCAGCATCTCCACAGGGTTTCCGCAAGGTGGGTTGTGATGCTGTTATTTTAA AGGTGAACTTCTTGTGGGTGGGGCTGAGTCTTAAAAATCTCTTTCTGGTTCACAGATGTC AAGGCCTTTAGTCCTGCCTTTGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGGAGCGCAACCCCCTTGAGGAGGTGTCTGGGGAGAGGATGGAGATGCAATGGCCATT CTCGGACAGGCAACGGCGGCGGCTAAGCAGCAGCTTCCTCTGAGCAGATGCTGGTGTCCT GTGTTTCCTGCAGATGTGGAACTTGTAATATTTTTTGGATTTCTGCACCAGGAGGTGGAA CCAGCCCCTCTGAAGACCTTATCCTCTAGGTCCAAGACAGTCTGATGCTGGCAGACAAGC CTTTCTTTCTGGTGCTGGAGGAAAATGGCACAACTGTAGAGACAGAAAAGTATTTCCAAT CCCTGGCAGATGACACCGTGTTCATGGTTCTTCATAAGGGGCAGAAATGGCAGCCCCCAT CACAAGCAGGTGAAATCCCACCTTTCCCTCCTGGTGAATCTTCTATTACTTCTTTACAGC TCGTCACTCACAACTCCCGTACTTTCTTCAATTCCAATGGGCTCCTCACTCTTCTCTCTC TCTCTCTCTCAGCATCTCCACAGGGTTTCCGCAAGGTGGGTTGTGATGCTGTTATTTTAA AGGTGAACTTCTTGTGGGTGGGGCTGAGTCTTAAAAATCTCTTTCTGGTTCACAGATGTC AAGGCCTTTAGTCCTGCCTTTGTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 236-355, + strand, RNAz p=0.669352 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 236-355, + strand, RNAz p=0.669352 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 196-383, gnl|bosTau2|chr22 (11993261-11993075) | |
| 196-383, gnl|canFam2|chr20 (11399619-11399740) | |
| 196-383, gnl|canFam2|chr20 (11399758-11399617) | |
| 196-383, gnl|danRer3|chr1 (14838435-14838322) | |
| 196-383, gnl|danRer3|chr1 (14838330-14838435) | |
| 196-383, gnl|dasNov1|scaffold_63843 (3528-3408) | |
| 196-383, gnl|dasNov1|scaffold_63843 (3391-3530) | |
| 196-383, gnl|echTel1|scaffold_325473 (51154-51033) | |
| 196-383, gnl|echTel1|scaffold_325473 (51013-51156) | |
| 196-383, gnl|fr1|chrUn (223144357-223144476) | |
| 196-383, gnl|fr1|chrUn (112432207-112432352) | |
| 196-383, gnl|hg17|chr3 (130071198-130071326) | |
| 196-383, gnl|hg17|chr3 (9886828-9886969) | |
| 196-383, gnl|Hg17|chr3 (9887020-9886834) | |
| 196-383, gnl|loxAfr1|scaffold_12207 (78118-78254) | |
| 196-383, gnl|loxAfr1|scaffold_138424 (1604-1483) | |
| 196-383, gnl|mm7|chr6 (113589442-113589321) | |
| 196-383, gnl|mm7|chr6 (113589304-113589444) | |
| 196-383, gnl|Mm7|chr6 (113589493-113589309) | |
| 196-383, gnl|monDom2|scaffold_5 (36639233-36639112) | |
| 196-383, gnl|monDom2|scaffold_5 (36639101-36639235) | |
| 196-383, gnl|oryCun1|scaffold_209265 (30140-30261) | |
| 196-383, gnl|oryCun1|scaffold_209265 (30277-30138) | |
| 196-383, gnl|panTro1|chr2 (132122600-132122728) | |
| 196-383, gnl|panTro1|chr2 (10262045-10262186) | |
| 196-383, gnl|rheMac2|chr11 (85976953-85976828) | |
| 196-383, gnl|rheMac2|chr2 (51098060-51097922) | |
| 196-383, gnl|rn3|chr4 (149559313-149559192) | |
| 196-383, gnl|rn3|chr4 (149559175-149559315) | |
| 196-383, gnl|tetNig1|chr11 (1016546-1016427) | |
| 196-383, gnl|tetNig1|chr11 (1016427-1016546) | |
| 196-383, gnl|xenTro1|scaffold_395 (1147515-1147643) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 196-383, gnl|bosTau2|chr22 (11993261-11993075) | |
| 196-383, gnl|canFam2|chr20 (11399619-11399740) | |
| 196-383, gnl|canFam2|chr20 (11399758-11399617) | |
| 196-383, gnl|danRer3|chr1 (14838435-14838322) | |
| 196-383, gnl|danRer3|chr1 (14838330-14838435) | |
| 196-383, gnl|dasNov1|scaffold_63843 (3528-3408) | |
| 196-383, gnl|dasNov1|scaffold_63843 (3391-3530) | |
| 196-383, gnl|echTel1|scaffold_325473 (51154-51033) | |
| 196-383, gnl|echTel1|scaffold_325473 (51013-51156) | |
| 196-383, gnl|fr1|chrUn (223144357-223144476) | |
| 196-383, gnl|fr1|chrUn (112432207-112432352) | |
| 196-383, gnl|hg17|chr3 (130071198-130071326) | |
| 196-383, gnl|hg17|chr3 (9886828-9886969) | |
| 196-383, gnl|Hg17|chr3 (9887020-9886834) | |
| 196-383, gnl|loxAfr1|scaffold_12207 (78118-78254) | |
| 196-383, gnl|loxAfr1|scaffold_138424 (1604-1483) | |
| 196-383, gnl|mm7|chr6 (113589442-113589321) | |
| 196-383, gnl|mm7|chr6 (113589304-113589444) | |
| 196-383, gnl|Mm7|chr6 (113589493-113589309) | |
| 196-383, gnl|monDom2|scaffold_5 (36639233-36639112) | |
| 196-383, gnl|monDom2|scaffold_5 (36639101-36639235) | |
| 196-383, gnl|oryCun1|scaffold_209265 (30140-30261) | |
| 196-383, gnl|oryCun1|scaffold_209265 (30277-30138) | |
| 196-383, gnl|panTro1|chr2 (132122600-132122728) | |
| 196-383, gnl|panTro1|chr2 (10262045-10262186) | |
| 196-383, gnl|rheMac2|chr11 (85976953-85976828) | |
| 196-383, gnl|rheMac2|chr2 (51098060-51097922) | |
| 196-383, gnl|rn3|chr4 (149559313-149559192) | |
| 196-383, gnl|rn3|chr4 (149559175-149559315) | |
| 196-383, gnl|tetNig1|chr11 (1016546-1016427) | |
| 196-383, gnl|tetNig1|chr11 (1016427-1016546) | |
| 196-383, gnl|xenTro1|scaffold_395 (1147515-1147643) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) |