Ss1.1-Pig3-SRG8007N16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATTGTAAAATGTTTATTGGTTTTACAAGTCAAAATATGACAGCAAATGTGCAAGCTAC ATGTTCCCTTGCTGTCTCACTCTGTGGAATCCTTGCAGTGGACATTTTTATGGACAATTT GATACATTCTGCCCCTTAAAAAGTGTGGGCTGTTTAATAGGTCCCGATAATATTTGGTTT AATATTCAACGATATGATTCCCCACTGAGGATTAATTTTGATGTCACCAAGCCCAAGCTA TGGAAATCTTTCTTTTCAAGAAGCCTTCCATATCCTGGCCTTTCCAGTGTTCAGCCAGAA GAGCTAATTTACCAGCGGACAGACAAAGTGGCTGCAGCTGAACTGCAAGACAGGATTGAA AAAATACTGAAAGAAAAAATCATGGACTGGAGGCCACGCCATCTGACTCGGTGGAACAGA TACTGTACCTCCACGCTGCGTCACTTCCTGCCTCTGTTAGAAAGAAACCAGGGCGAAGAC GTGGAAGACGACCACAGGGCAGAACTGCTCAGACAGCTGGGAGACTACAGGTTCTCTGGA TTTCCCCTTCACATGCCATACTCTGAAGTGAAGCCTTTAATCGAAGCTGTGTACAGTACT GGGGTACATAATATTGATGCTCCCAATGTTGAATTTGCTTTAGCTGTATACATCCACCCA TATCCCAAAAATGTTTTGTCTGTTTGGATTTATGTTGCCTCCCTTATACGCAACAGATAA TTGTTTCATTGTACATTTTTTTATCATGTAAAAATGACAGTTAAGATATGAGAATATTTT AAAATGCAACTGATCCACCAGAGAGAAGAAAATACTTACAAATAATGAAATAAAATCATT ATTTTCAAAATGTACAAAATAAATGTTTTTATTTAGTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATTGTAAAATGTTTATTGGTTTTACAAGTCAAAATATGACAGCAAATGTGCAAGCTAC ATGTTCCCTTGCTGTCTCACTCTGTGGAATCCTTGCAGTGGACATTTTTATGGACAATTT GATACATTCTGCCCCTTAAAAAGTGTGGGCTGTTTAATAGGTCCCGATAATATTTGGTTT AATATTCAACGATATGATTCCCCACTGAGGATTAATTTTGATGTCACCAAGCCCAAGCTA TGGAAATCTTTCTTTTCAAGAAGCCTTCCATATCCTGGCCTTTCCAGTGTTCAGCCAGAA GAGCTAATTTACCAGCGGACAGACAAAGTGGCTGCAGCTGAACTGCAAGACAGGATTGAA AAAATACTGAAAGAAAAAATCATGGACTGGAGGCCACGCCATCTGACTCGGTGGAACAGA TACTGTACCTCCACGCTGCGTCACTTCCTGCCTCTGTTAGAAAGAAACCAGGGCGAAGAC GTGGAAGACGACCACAGGGCAGAACTGCTCAGACAGCTGGGAGACTACAGGTTCTCTGGA TTTCCCCTTCACATGCCATACTCTGAAGTGAAGCCTTTAATCGAAGCTGTGTACAGTACT GGGGTACATAATATTGATGCTCCCAATGTTGAATTTGCTTTAGCTGTATACATCCACCCA TATCCCAAAAATGTTTTGTCTGTTTGGATTTATGTTGCCTCCCTTATACGCAACAGATAA TTGTTTCATTGTACATTTTTTTATCATGTAAAAATGACAGTTAAGATATGAGAATATTTT AAAATGCAACTGATCCACCAGAGAGAAGAAAATACTTACAAATAATGAAATAAAATCATT ATTTTCAAAATGTACAAAATAAATGTTTTTATTTAGTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 596-706, + strand, RNAz p=0.507851 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 596-706, + strand, RNAz p=0.507851 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 85-186, gnl|bosTau2|chr6 (62753532-62753431) | |
| 85-186, gnl|canFam2|chr3 (67574346-67574181) | |
| 85-186, gnl|danRer3|chr7 (4530121-4529962) | |
| 85-186, gnl|dasNov1|scaffold_29297 (10115-9970) | |
| 85-186, gnl|echTel1|scaffold_174614 (567-396) | |
| 85-186, gnl|fr1|chrUn (37738498-37738347) | |
| 85-186, gnl|galGal2|chr4 (77006484-77006312) | |
| 85-186, gnl|hg17|chr4 (15267427-15267598) | |
| 85-186, gnl|Hg17|chr4 (15267485-15267586) | |
| 85-186, gnl|loxAfr1|scaffold_2913 (23208-23038) | |
| 85-186, gnl|mm7|chr5 (43055865-43056036) | |
| 85-186, gnl|Mm7|chr5 (43055923-43056024) | |
| 85-186, gnl|monDom2|scaffold_10 (24406001-24405839) | |
| 85-186, gnl|oryCun1|scaffold_198270 (50239-50083) | |
| 85-186, gnl|panTro1|chr3 (15571577-15571748) | |
| 85-186, gnl|rheMac2|chr5 (10384282-10384453) | |
| 85-186, gnl|rn3|chr14 (72524240-72524069) | |
| 85-186, gnl|tetNig1|chr1_random (1688766-1688912) | |
| 85-186, gnl|xenTro1|scaffold_158 (282262-282423) | |
| 528-706, gnl|bosTau2|chr26 (8774079-8773903) | |
| 528-706, gnl|canFam2|chr28 (12477697-12477906) | |
| 528-706, gnl|danRer3|chr7 (4523521-4523337) | |
| 528-706, gnl|dasNov1|scaffold_29297 (352-143) | |
| 528-706, gnl|echTel1|scaffold_313364 (12264-12060) | |
| 528-706, gnl|fr1|chrUn (37737572-37737380) | |
| 528-706, gnl|hg17|chr10 (97781553-97781762) | |
| 528-706, gnl|Hg17|chr10 (97781564-97781740) | |
| 528-706, gnl|loxAfr1|scaffold_15597 (11761-11968) | |
| 528-706, gnl|mm7|chr19 (40720995-40721204) | |
| 528-706, gnl|Mm7|chr19 (40721006-40721182) | |
| 528-706, gnl|monDom2|scaffold_14 (26749206-26749002) | |
| 528-706, gnl|oryCun1|scaffold_198270 (41218-41013) | |
| 528-706, gnl|panTro1|chr8 (99468915-99469124) | |
| 528-706, gnl|rheMac2|chr9 (95567149-95567358) | |
| 528-706, gnl|rn3|chr1 (246107644-246107853) | |
| 528-706, gnl|tetNig1|chrUn_random (139008357-139008162) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-186, gnl|bosTau2|chr6 (62753532-62753431) | |
| 85-186, gnl|canFam2|chr3 (67574346-67574181) | |
| 85-186, gnl|danRer3|chr7 (4530121-4529962) | |
| 85-186, gnl|dasNov1|scaffold_29297 (10115-9970) | |
| 85-186, gnl|echTel1|scaffold_174614 (567-396) | |
| 85-186, gnl|fr1|chrUn (37738498-37738347) | |
| 85-186, gnl|galGal2|chr4 (77006484-77006312) | |
| 85-186, gnl|hg17|chr4 (15267427-15267598) | |
| 85-186, gnl|Hg17|chr4 (15267485-15267586) | |
| 85-186, gnl|loxAfr1|scaffold_2913 (23208-23038) | |
| 85-186, gnl|mm7|chr5 (43055865-43056036) | |
| 85-186, gnl|Mm7|chr5 (43055923-43056024) | |
| 85-186, gnl|monDom2|scaffold_10 (24406001-24405839) | |
| 85-186, gnl|oryCun1|scaffold_198270 (50239-50083) | |
| 85-186, gnl|panTro1|chr3 (15571577-15571748) | |
| 85-186, gnl|rheMac2|chr5 (10384282-10384453) | |
| 85-186, gnl|rn3|chr14 (72524240-72524069) | |
| 85-186, gnl|tetNig1|chr1_random (1688766-1688912) | |
| 85-186, gnl|xenTro1|scaffold_158 (282262-282423) | |
| 528-706, gnl|bosTau2|chr26 (8774079-8773903) | |
| 528-706, gnl|canFam2|chr28 (12477697-12477906) | |
| 528-706, gnl|danRer3|chr7 (4523521-4523337) | |
| 528-706, gnl|dasNov1|scaffold_29297 (352-143) | |
| 528-706, gnl|echTel1|scaffold_313364 (12264-12060) | |
| 528-706, gnl|fr1|chrUn (37737572-37737380) | |
| 528-706, gnl|hg17|chr10 (97781553-97781762) | |
| 528-706, gnl|Hg17|chr10 (97781564-97781740) | |
| 528-706, gnl|loxAfr1|scaffold_15597 (11761-11968) | |
| 528-706, gnl|mm7|chr19 (40720995-40721204) | |
| 528-706, gnl|Mm7|chr19 (40721006-40721182) | |
| 528-706, gnl|monDom2|scaffold_14 (26749206-26749002) | |
| 528-706, gnl|oryCun1|scaffold_198270 (41218-41013) | |
| 528-706, gnl|panTro1|chr8 (99468915-99469124) | |
| 528-706, gnl|rheMac2|chr9 (95567149-95567358) | |
| 528-706, gnl|rn3|chr1 (246107644-246107853) | |
| 528-706, gnl|tetNig1|chrUn_random (139008357-139008162) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| tra (0.246184) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| rec (0.17307) | |
| cki (0.165235) | |
| fco (0.157208) | |
| ski (0.146735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| med (0.116252) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.246184) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| rec (0.17307) | |
| cki (0.165235) | |
| fco (0.157208) | |
| ski (0.146735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| med (0.116252) | |
| cbl (0.114797) | |
| spc (0.113366) |