Non-Coding RNA Search

Ss1.1-Pig3-SRG8008E19.3

Sequence:


               
               CTTTCTCGTTCCCTTTCACGCTCCCTCTCTCTTTCTCTCCGTTCTTTCTCAATTTCCTGT
CTTTCTTTTTCCTTTTTGCCTTTCTCTTCTTCCAGTTTCTAGAAACCAATAAAAGTACTT
TTAGAGTTAACTCTGTAGCTCCAGTAGTCAAGATTTCCCCGGCGCAGTGCCCAATATTAG
AAACAAACAAACCAAAAAAACCCACAAACAAACCACTGGTACTTTAATATTAAATACTTG
TGGTTTTACTTGACATATTAAACTGAAACAATCATAAGCCTAGATAGATTTCGTGCAAAA
CCATATACTCTACACAGACCAGGAATCTCCAATCTTGGATGCTGGGAGATTGTGTCAAGT
GTGGCTGACCACTCAATGATCATGTAGTAACTAAAATGACTATGAGGAATGCGATGGTTA
ATAATAATTTCTAGAAATACAATCACTTGGCTAAACCATAATTCTTCCCATTATGAATTT
ATTTAAATCAGTGTGACTACTAGTACTATCTATAACCCCAGGTAACTAAAGGTTATTACT
TGAGGGTTTTAAAGGGGAGGTGGGGGAAGAGAGGTCACTGGAAGGCAACTAAATAATCTT
CTGCCCTCTGGTTTGCCCACCCTCCAAAAGATAAGCTGAGTTTAGCCAATATCTGCCCTA
TTATCTATGGAAACATTTACTCCCACCATTACAAGATGGACAGCCCACCAAATACAAAAA
TTTTCAATCACTCACTTCAAGCAAAAATGTACATAATCATATTTTCATTTAATTAAATTA
ATTTTGGCTTAATTTTAAAAGCAACATATTTATGCCCATTATGTCTAGAAGACAATGAAA
ATATATCAACAGTGATAAATCCATCCTTGGAAGGAACGATTGCGTATTAACTTACAGATG
CTGTGCTAGGACATGGATCGCCAACACTGGATTAACCTTGCCTACAAGCTATGCTTCTGG
GAGGAAGAGCAAGTACATGGTTCACAAATAAACCAAATAACAAAGTCAGACCAAGTTTGT
ACCCTGACAAGATTACCAGTGTACCACACGGTTTCCATACAAACTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTCGTTCCCTTTCACGCTCCCTCTCTCTTTCTCTCCGTTCTTTCTCAATTTCCTGT
CTTTCTTTTTCCTTTTTGCCTTTCTCTTCTTCCAGTTTCTAGAAACCAATAAAAGTACTT
TTAGAGTTAACTCTGTAGCTCCAGTAGTCAAGATTTCCCCGGCGCAGTGCCCAATATTAG
AAACAAACAAACCAAAAAAACCCACAAACAAACCACTGGTACTTTAATATTAAATACTTG
TGGTTTTACTTGACATATTAAACTGAAACAATCATAAGCCTAGATAGATTTCGTGCAAAA
CCATATACTCTACACAGACCAGGAATCTCCAATCTTGGATGCTGGGAGATTGTGTCAAGT
GTGGCTGACCACTCAATGATCATGTAGTAACTAAAATGACTATGAGGAATGCGATGGTTA
ATAATAATTTCTAGAAATACAATCACTTGGCTAAACCATAATTCTTCCCATTATGAATTT
ATTTAAATCAGTGTGACTACTAGTACTATCTATAACCCCAGGTAACTAAAGGTTATTACT
TGAGGGTTTTAAAGGGGAGGTGGGGGAAGAGAGGTCACTGGAAGGCAACTAAATAATCTT
CTGCCCTCTGGTTTGCCCACCCTCCAAAAGATAAGCTGAGTTTAGCCAATATCTGCCCTA
TTATCTATGGAAACATTTACTCCCACCATTACAAGATGGACAGCCCACCAAATACAAAAA
TTTTCAATCACTCACTTCAAGCAAAAATGTACATAATCATATTTTCATTTAATTAAATTA
ATTTTGGCTTAATTTTAAAAGCAACATATTTATGCCCATTATGTCTAGAAGACAATGAAA
ATATATCAACAGTGATAAATCCATCCTTGGAAGGAACGATTGCGTATTAACTTACAGATG
CTGTGCTAGGACATGGATCGCCAACACTGGATTAACCTTGCCTACAAGCTATGCTTCTGG
GAGGAAGAGCAAGTACATGGTTCACAAATAAACCAAATAACAAAGTCAGACCAAGTTTGT
ACCCTGACAAGATTACCAGTGTACCACACGGTTTCCATACAAACTCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               816-1014, - strand, RNAz p=0.86551

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               816-1014, - strand, RNAz p=0.86551

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1067, gnl|bosTau2|chr10 (59611881-59610812)
               

               
               1-1067, gnl|Hg17|chr14 (72639750-72638712)
               

               
               1-1067, gnl|Mm7|chr12 (81660113-81659108)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1067, gnl|bosTau2|chr10 (59611881-59610812)
               

               
               1-1067, gnl|Hg17|chr14 (72639750-72638712)
               

               
               1-1067, gnl|Mm7|chr12 (81660113-81659108)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-1067, gnl\|bosTau2\|chr10 (59611881-59610812)
	1-1067, gnl\|Hg17\|chr14 (72639750-72638712)
	1-1067, gnl\|Mm7\|chr12 (81660113-81659108)