Non-Coding RNA Search

Ss1.1-Pig3-SRG8008F22.3

Sequence:


               
               GGGAAAGACGCGTGATGAAGGGTTTTTTTTTACATGATCTTTTTTTTCCAAATCACTGTT
TAAGCTAATAAATATTTTTTTATGAAGAGGAAAAGCGTGTAGATGACATCTCACATTTTG
TACCTTTTCGTCTGTGTGCGTCTGTTCGGTGTTTGCGGTGCCAGCGCGGAAGGCGGTCCG
TCGGTCCTGCGGGCGGCCGTCGGGTGGGGTGGGGGCGGGGCAGGGACCCGAGATTTTGTA
TCAAGCTCTGGATCCTGAGCCGGCTGTATGTTTGGACTCTGGGTTTGGGAACCGTCATGA
CACTGCCAGGACTCGATAGGGACCTCGACTCAAAGGACACAGCTACTGCTTCCAACTTTG
CACATCTTCCTTTTTAAAAAAGAGAACTCTGAGAAAAATGCAAGAACTGGAACTTTTTGC
AATATTATATGAAAGATAATCTTATTTTCGCTCATTCTGTGACATGTGCACCTCTTAAGA
AAGCCATACTTAATGGTGTTTTTATTTTTTAGATTCTATGCTGTGTTTTGTACGCGGCCC
TTTTTAGAGCTACTCGTCGTGAGGGCGCTGTGTGTGCTTTTCTTAAATATTTATTTTTTC
AACATGCTTTCAACCTGTCAACGACAACAAAACAGACAAAAAAGGGCAGTGTTTGAAGAT
TGTTGAGTTTTTCTGGGGATAATCTATATTATATTGACTTTATATTGATGATGATAAACC
TGTGTTTGTATTGGAGATGTGTTTAATATTCAGGGGAGTTTTCCGTCATTGGTCCGTGGG
ACGTCACGGCTGGCGCCCGCTTCCCTACAGCCATCGGCAGGTGAACGGCCCCTCCCCCCG
AGTGGTCTGGAGATTTCTTGTCTGCCTGGGCGCACTCTGGGCCTGCCTGTGGGTCTCCTC
TCTGTGACGGGCTTAGTTAGACTCTTGCAAAACGATCATTTTCAATAAACTGGGAAATCG
CTGCCTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAAGACGCGTGATGAAGGGTTTTTTTTTACATGATCTTTTTTTTCCAAATCACTGTT
TAAGCTAATAAATATTTTTTTATGAAGAGGAAAAGCGTGTAGATGACATCTCACATTTTG
TACCTTTTCGTCTGTGTGCGTCTGTTCGGTGTTTGCGGTGCCAGCGCGGAAGGCGGTCCG
TCGGTCCTGCGGGCGGCCGTCGGGTGGGGTGGGGGCGGGGCAGGGACCCGAGATTTTGTA
TCAAGCTCTGGATCCTGAGCCGGCTGTATGTTTGGACTCTGGGTTTGGGAACCGTCATGA
CACTGCCAGGACTCGATAGGGACCTCGACTCAAAGGACACAGCTACTGCTTCCAACTTTG
CACATCTTCCTTTTTAAAAAAGAGAACTCTGAGAAAAATGCAAGAACTGGAACTTTTTGC
AATATTATATGAAAGATAATCTTATTTTCGCTCATTCTGTGACATGTGCACCTCTTAAGA
AAGCCATACTTAATGGTGTTTTTATTTTTTAGATTCTATGCTGTGTTTTGTACGCGGCCC
TTTTTAGAGCTACTCGTCGTGAGGGCGCTGTGTGTGCTTTTCTTAAATATTTATTTTTTC
AACATGCTTTCAACCTGTCAACGACAACAAAACAGACAAAAAAGGGCAGTGTTTGAAGAT
TGTTGAGTTTTTCTGGGGATAATCTATATTATATTGACTTTATATTGATGATGATAAACC
TGTGTTTGTATTGGAGATGTGTTTAATATTCAGGGGAGTTTTCCGTCATTGGTCCGTGGG
ACGTCACGGCTGGCGCCCGCTTCCCTACAGCCATCGGCAGGTGAACGGCCCCTCCCCCCG
AGTGGTCTGGAGATTTCTTGTCTGCCTGGGCGCACTCTGGGCCTGCCTGTGGGTCTCCTC
TCTGTGACGGGCTTAGTTAGACTCTTGCAAAACGATCATTTTCAATAAACTGGGAAATCG
CTGCCTGAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-968, gnl|bosTau2|chr13 (35317618-35318591)
               

               
               1-968, gnl|Hg17|chr20 (61846411-61845467)
               

               
               1-968, gnl|Mm7|chr2 (181889623-181888677)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-968, gnl|bosTau2|chr13 (35317618-35318591)
               

               
               1-968, gnl|Hg17|chr20 (61846411-61845467)
               

               
               1-968, gnl|Mm7|chr2 (181889623-181888677)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               bla (0.124347)

	1-968, gnl\|bosTau2\|chr13 (35317618-35318591)
	1-968, gnl\|Hg17\|chr20 (61846411-61845467)
	1-968, gnl\|Mm7\|chr2 (181889623-181888677)