Non-Coding RNA Search

Ss1.1-Pig3-SRG8008H13.3

Sequence:


               
               CCACAAATTAATAGCTGATGTTTGTACTGATTTTATTTCAGTATATGCTCAGATCTCTCA
ATACATTTGTAAGTTGAGAAAGTGTACTGAATTGCTTTCTTGACAAACTCCACTAAATGG
CAGAATACCTATCGAATATTGGTTGCTGCATTTTGGTGTTTATCATTAAAACTGATTATC
TATCCATGTTCTAATTAAATATTTATATTTTAATAGATAAGGAAATAGTTTGCAATGAGA
TGTTTCCGTTCTTGAAAGAAAATAGATAATACAAATCGTAGCAATGTCAAGAATATTAAA
AAGGTGTAAAAGAGGTATGCACATTGTTGTTTTATATGAAACCAAGTAAGCACAGACTAT
GGGTATCCTTCCAACTCTTGGGAAGCTAAATTGAGACTACCATTTCTTTCTTTCTGTTTA
CCTCTTTTTTAAGAACTTCCAGTTGTACAGTGTTTAGCGTATGGGGATGTATCAAATGTA
TCTATACTGTGATTTAAGAGACTGTAAACCTGGATGATTTCTGACCTGGGAAAACATGTA
GATTAAGTGAAAAGAAAAGTTTAGGAAAATTCTTTTCTTGTAATCCTTCGATTGACATTA
GATTTATTAATTATACATTTTATTTAAATGCTTATTAAAAGTATGTGATTTATGGAGTTC
CCACTCTGGTGCATCAGGTTAAGGATCCAGCATTACTGCAACTGTGGCATAAGTCACAGC
TGTGGCTCGGATTTGATCCTTTGTTGGGAACTTCATATGCCGTGGGTGCAGCTGAAAAAG
AAAAGGGAGAAAACATGTGATTTATAATATTTAGAAATTAGCCACACAAAAGTAGAAAAT
GACTAGATATTTTACCTTGTTTTGCCACTTTCTAGAATGTATACCTGTATGTTCTAATGT
ATCATAATCATTCATTTTCATTTAAAAATCAAATTTTCATAATTCTATTCAGTTTTAAAC
TATAACAACTTTAATTTCATATTTTGTAAAGGGCTAAAAATATTTAAACTACAAATGGCT
ATTATATTTTAATTCTAAATAAAAGATAATGTAAATAATAAGCATGGATCTAATTTGAAT
AAAGATTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACAAATTAATAGCTGATGTTTGTACTGATTTTATTTCAGTATATGCTCAGATCTCTCA
ATACATTTGTAAGTTGAGAAAGTGTACTGAATTGCTTTCTTGACAAACTCCACTAAATGG
CAGAATACCTATCGAATATTGGTTGCTGCATTTTGGTGTTTATCATTAAAACTGATTATC
TATCCATGTTCTAATTAAATATTTATATTTTAATAGATAAGGAAATAGTTTGCAATGAGA
TGTTTCCGTTCTTGAAAGAAAATAGATAATACAAATCGTAGCAATGTCAAGAATATTAAA
AAGGTGTAAAAGAGGTATGCACATTGTTGTTTTATATGAAACCAAGTAAGCACAGACTAT
GGGTATCCTTCCAACTCTTGGGAAGCTAAATTGAGACTACCATTTCTTTCTTTCTGTTTA
CCTCTTTTTTAAGAACTTCCAGTTGTACAGTGTTTAGCGTATGGGGATGTATCAAATGTA
TCTATACTGTGATTTAAGAGACTGTAAACCTGGATGATTTCTGACCTGGGAAAACATGTA
GATTAAGTGAAAAGAAAAGTTTAGGAAAATTCTTTTCTTGTAATCCTTCGATTGACATTA
GATTTATTAATTATACATTTTATTTAAATGCTTATTAAAAGTATGTGATTTATGGAGTTC
CCACTCTGGTGCATCAGGTTAAGGATCCAGCATTACTGCAACTGTGGCATAAGTCACAGC
TGTGGCTCGGATTTGATCCTTTGTTGGGAACTTCATATGCCGTGGGTGCAGCTGAAAAAG
AAAAGGGAGAAAACATGTGATTTATAATATTTAGAAATTAGCCACACAAAAGTAGAAAAT
GACTAGATATTTTACCTTGTTTTGCCACTTTCTAGAATGTATACCTGTATGTTCTAATGT
ATCATAATCATTCATTTTCATTTAAAAATCAAATTTTCATAATTCTATTCAGTTTTAAAC
TATAACAACTTTAATTTCATATTTTGTAAAGGGCTAAAAATATTTAAACTACAAATGGCT
ATTATATTTTAATTCTAAATAAAAGATAATGTAAATAATAAGCATGGATCTAATTTGAAT
AAAGATTTAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-635, gnl|bosTau2|chr22 (23024050-23024674)
               

               
               1-635, gnl|Hg17|chr3 (69152603-69151967)
               

               
               1-635, gnl|Mm7|chr6 (97241185-97240593)
               


               
               790-1092, gnl|bosTau2|chr22 (23024666-23024988)
               

               
               790-1092, gnl|Hg17|chr3 (69151975-69151675)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-635, gnl|bosTau2|chr22 (23024050-23024674)
               

               
               1-635, gnl|Hg17|chr3 (69152603-69151967)
               

               
               1-635, gnl|Mm7|chr6 (97241185-97240593)
               


               
               790-1092, gnl|bosTau2|chr22 (23024666-23024988)
               

               
               790-1092, gnl|Hg17|chr3 (69151975-69151675)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               sag (0.36543)
               

               
               cbe (0.239234)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               kid (0.129735)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               cbe (0.239234)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               kid (0.129735)

	1-635, gnl\|bosTau2\|chr22 (23024050-23024674)
	1-635, gnl\|Hg17\|chr3 (69152603-69151967)
	1-635, gnl\|Mm7\|chr6 (97241185-97240593)

	790-1092, gnl\|bosTau2\|chr22 (23024666-23024988)
	790-1092, gnl\|Hg17\|chr3 (69151975-69151675)

	sag (0.36543)
	cbe (0.239234)
	fli (0.202881)
	mgm (0.180343)
	gul (0.177588)
	fbs (0.175346)
	bfe (0.149858)
	liv (0.146284)
	kid (0.129735)