Non-Coding RNA Search

Ss1.1-Pig3-SRG8008J17.3

Sequence:


               
               GGAGGCCTTTCTCAGCAGTTTAAGCAATGGGTGTGAATACTTCACAAAGCTGTGAAGGCT
TGTTTTAAATACTACAGTAACTTAACCTTTTGTGAAGACCATAGCATTTAACTGAGAAAA
ATTTGAGGCTTTCTGGTTTACATCTATTTTATAGTTTTTTGTTAGTTTGAAACGTTATGT
AAGCTTTGATTTAAACAAAGTTTGTTTCAATATGTTAATGATGTAGCCAAAATATTTATT
GAAAGACAAAGTAGAGTATTTTAATGTGATACCTGCCATTTTTTTCTTAAAGCACATTTT
TTTTGCATCTAACTGCCAGTGCCATTGTCAAAACTTGTTTTTAAAATTGTTGTACATTTC
TTATTAAACAAGTGCTTAATTTTAAAGTATTATGTTGCCATTCTGTAGTGTATAAAAATG
TATAATTTGCCAATTCATTGTAACTACTATTTATTTTTAATGAAAGTGTCAGAATCCTTT
CTGATTGAAGAAATTTGAGTTATTAAACTGTCCTTATCTTCTTTTCTAATGTAGCATAAA
ATTTCCCTGAGTTTGAGTTACAACTGCCAGTAGATGACCAGTCCAAGTGAACCACTTCTC
AGTTGCCAGACTTTGCTCATATTAAAAACAACTTAACAAATGTTTAGTTTTTGTATCTAA
TCTCTGATTATTAAAATGTTTATAAAGTTTATTTTTACCAAAGAGATGCAATTCATTATG
ATAAAGTATTACAGAATAAACTTTGTTTTATAACAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCCTTTCTCAGCAGTTTAAGCAATGGGTGTGAATACTTCACAAAGCTGTGAAGGCT
TGTTTTAAATACTACAGTAACTTAACCTTTTGTGAAGACCATAGCATTTAACTGAGAAAA
ATTTGAGGCTTTCTGGTTTACATCTATTTTATAGTTTTTTGTTAGTTTGAAACGTTATGT
AAGCTTTGATTTAAACAAAGTTTGTTTCAATATGTTAATGATGTAGCCAAAATATTTATT
GAAAGACAAAGTAGAGTATTTTAATGTGATACCTGCCATTTTTTTCTTAAAGCACATTTT
TTTTGCATCTAACTGCCAGTGCCATTGTCAAAACTTGTTTTTAAAATTGTTGTACATTTC
TTATTAAACAAGTGCTTAATTTTAAAGTATTATGTTGCCATTCTGTAGTGTATAAAAATG
TATAATTTGCCAATTCATTGTAACTACTATTTATTTTTAATGAAAGTGTCAGAATCCTTT
CTGATTGAAGAAATTTGAGTTATTAAACTGTCCTTATCTTCTTTTCTAATGTAGCATAAA
ATTTCCCTGAGTTTGAGTTACAACTGCCAGTAGATGACCAGTCCAAGTGAACCACTTCTC
AGTTGCCAGACTTTGCTCATATTAAAAACAACTTAACAAATGTTTAGTTTTTGTATCTAA
TCTCTGATTATTAAAATGTTTATAAAGTTTATTTTTACCAAAGAGATGCAATTCATTATG
ATAAAGTATTACAGAATAAACTTTGTTTTATAACAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-114, - strand, RNAz p=0.904979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, - strand, RNAz p=0.904979

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-755, gnl|bosTau2|chr11 (24612463-24611717)
               

               
               1-755, gnl|Hg17|chr2 (48517308-48518083)
               

               
               1-755, gnl|Mm7|chr17 (86795584-86796262)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-755, gnl|bosTau2|chr11 (24612463-24611717)
               

               
               1-755, gnl|Hg17|chr2 (48517308-48518083)
               

               
               1-755, gnl|Mm7|chr17 (86795584-86796262)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               gul (0.532765)
               

               
               lin (0.436808)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               lin (0.436808)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)

	1-755, gnl\|bosTau2\|chr11 (24612463-24611717)
	1-755, gnl\|Hg17\|chr2 (48517308-48518083)
	1-755, gnl\|Mm7\|chr17 (86795584-86796262)

	gul (0.532765)
	lin (0.436808)
	rec (0.346141)
	fco (0.314416)
	ret (0.257467)
	cbe (0.239234)
	spc (0.226732)
	aor (0.195274)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	lnt (0.142308)
	nca (0.136874)
	ssp (0.13552)
	thg (0.126791)