Non-Coding RNA Search

Ss1.1-Pig3-SRG8008M09.3

Sequence:


               
               GCAAGGAGAATCCCAAATACAAGATTGTAGCAATCAGCTGTACCGCAGATGTCTTAAAGG
CCACCAAAGAAGACAGATTCCAGGAGTTTGCTGATATTGTCATACCTCTCATCAAGAAGA
ACTCACCTGAAAGCATTGGAGTCCGGACAAGCAAAAACGAAGATGAGAATGAGAAGGAAA
AGGAGCTCCAGCTGGAATCTCTGCTGGGAGCCTTTGAAAGTCTGGGCAAAGCCTGGCCCC
GAAATGTGGAGACCCAACGTTGTTATCGCCAGGAACTGTGCAAATTGATGTGTGAACGGC
TAAAACTCAGCACGTGGAAAGTGCAGCTAGGAGTCCTACAGTCAATGAATGCCTTTTTTC
AGGGATTAATGCTTTTAGAAGAAGAACATGCAGATCCTGAGGCTTTGGCTGAAATTCTCC
TTGAAACTTGTAAATCAATCACATATTCTTTAGAAAATAAGACCTACTCATCTGTGAGAA
CAGAAGCTTTATCTGTGATAGAATTGCTGCTTAAAAAACTTGAAGAATCTAAACAGTGGG
AAAGCTTGACATCTGAGTGCAGAGTGCTCTTAATTGAGTCTTTAGCAACTATGGAGACAG
ACAGCAGACCCGAGCTGCAGGAGAAAGCATCGTTACTGAAGAAAACACTTGAAAATCTAG
AATAAATTAGAAGGGGAAGAAACAGACAAGTGCCATGTTCATTGGGGGTTGAAATGGTGG
TATTCTTTGAAAAACCAAGTGGGGAAAAGTAAAGATTAATCTGTAGCATGCATCATTCCT
TGGCTGAAATAAAAAAAAAAAATGCCTTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGGAGAATCCCAAATACAAGATTGTAGCAATCAGCTGTACCGCAGATGTCTTAAAGG
CCACCAAAGAAGACAGATTCCAGGAGTTTGCTGATATTGTCATACCTCTCATCAAGAAGA
ACTCACCTGAAAGCATTGGAGTCCGGACAAGCAAAAACGAAGATGAGAATGAGAAGGAAA
AGGAGCTCCAGCTGGAATCTCTGCTGGGAGCCTTTGAAAGTCTGGGCAAAGCCTGGCCCC
GAAATGTGGAGACCCAACGTTGTTATCGCCAGGAACTGTGCAAATTGATGTGTGAACGGC
TAAAACTCAGCACGTGGAAAGTGCAGCTAGGAGTCCTACAGTCAATGAATGCCTTTTTTC
AGGGATTAATGCTTTTAGAAGAAGAACATGCAGATCCTGAGGCTTTGGCTGAAATTCTCC
TTGAAACTTGTAAATCAATCACATATTCTTTAGAAAATAAGACCTACTCATCTGTGAGAA
CAGAAGCTTTATCTGTGATAGAATTGCTGCTTAAAAAACTTGAAGAATCTAAACAGTGGG
AAAGCTTGACATCTGAGTGCAGAGTGCTCTTAATTGAGTCTTTAGCAACTATGGAGACAG
ACAGCAGACCCGAGCTGCAGGAGAAAGCATCGTTACTGAAGAAAACACTTGAAAATCTAG
AATAAATTAGAAGGGGAAGAAACAGACAAGTGCCATGTTCATTGGGGGTTGAAATGGTGG
TATTCTTTGAAAAACCAAGTGGGGAAAAGTAAAGATTAATCTGTAGCATGCATCATTCCT
TGGCTGAAATAAAAAAAAAAAATGCCTTAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26326365|dbj|BAC26926.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26326365|dbj|BAC26926.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               118-260, gnl|bosTau2|chr8 (55451161-55451019)
               

               
               118-260, gnl|Hg17|chr9 (111211010-111210868)
               

               
               118-260, gnl|Mm7|chr4 (58849280-58849138)
               


               
               524-811, gnl|bosTau2|chr8 (55442298-55442013)
               

               
               524-811, gnl|Hg17|chr9 (111204006-111203721)
               

               
               524-811, gnl|Mm7|chr4 (58841711-58841419)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-260, gnl|bosTau2|chr8 (55451161-55451019)
               

               
               118-260, gnl|Hg17|chr9 (111211010-111210868)
               

               
               118-260, gnl|Mm7|chr4 (58849280-58849138)
               


               
               524-811, gnl|bosTau2|chr8 (55442298-55442013)
               

               
               524-811, gnl|Hg17|chr9 (111204006-111203721)
               

               
               524-811, gnl|Mm7|chr4 (58841711-58841419)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               ssp (0.271039)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               ssp (0.271039)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

	118-260, gnl\|bosTau2\|chr8 (55451161-55451019)
	118-260, gnl\|Hg17\|chr9 (111211010-111210868)
	118-260, gnl\|Mm7\|chr4 (58849280-58849138)

	524-811, gnl\|bosTau2\|chr8 (55442298-55442013)
	524-811, gnl\|Hg17\|chr9 (111204006-111203721)
	524-811, gnl\|Mm7\|chr4 (58841711-58841419)

	vin (0.332557)
	bfe (0.299715)
	ssp (0.271039)
	aor (0.195274)
	fco (0.157208)
	isp (0.150376)
	csk (0.140746)
	thg (0.126791)
	nbm (0.0993246)