Non-Coding RNA Search

Ss1.1-Pig3-SRG8008N01.3

Sequence:


               
               TTCAAAGGCCATGAGGTGGCAGCGATGCTCAAGAGTGAGCTGCAGAAGCAAAAGGCAGAC
TTTCTGATATTCAGAGCCCTGGAAATCAATACTGTCACCTGCCAGTTGAACTGTTCTGAC
CATGGCCACTGTGATTCATTCACCAAACGCTGTATCTGTGACCCTTTCTGGATGGAGAAT
TTCATCAAGGTGCAGCTGAGGGATGGAGATAGCAACTGTGAGTGGAGTGTGTTATATGTC
ATCATCGCTTCCTTTGTCATCGTTGTTGCCTTGGGAATTCTGTCCTGGACTGTGATCTGT
TGTTGTAAGAGGCAAAAAGGAAAACCCAAGAGAAAAAGCAAGTACAAGATCCTGGATGCC
ACGGATCAGGAAAGCCTAGAATTGAAGCCAACCTCCCGAGCAGGCATCAAACAGAAGGGC
CCAATGCTGAGCAGCAGCCTGATGCACTCGGAGTCCGAGCTGGACAGTGATGATGCCATC
TTCACGTGGCCAGACCGAGAGAAGGGCAAACTCCTGCATGGTCAGAATGGCTCCGTGCCC
AACGGGCAGACCCCGCTCAAGGCCAGGAGCCCACGGGAGGAGATCTTGTAGTCTCCGGGT
CTGTCTCCTCAGGTTAGGGTCAGCAGTGCCAGTCTGCTTCTCATACCTCCCAAGTCTGAG
GGCAGCTGCTGGTCACTCCACCCTAACACCTCAACCAGAGCTGCTGGTACTTGAATCTAG
AGACATTCTCCAGGCACCCCGGAATGAAGCTGTGAACGAAGAGTTTTCCTCTTTAACCTG
TCTGGTAGGTCCCCCCCAACGTCCTCACCTCAGGGCCACCTTTTTTCCAGCCTCTCCCCT
GCTCCGAGGGCAGATGGTGCCAGCTCCTGGCCTCCTCTCCAGCTCCCTGTTGGCAGGGTT
GCTGCTCCCAGGGCGACTGCACAGTGAGGCCTGGCTGTGTCCTCCACACCTGGGTACAGA
ACGAAGCACCACAGCCGTCTGGCTCCAAAAGCCTGCTTGCGGGCATGGTCTTTGTTCTCT
TCTCGGGATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAAGGCCATGAGGTGGCAGCGATGCTCAAGAGTGAGCTGCAGAAGCAAAAGGCAGAC
TTTCTGATATTCAGAGCCCTGGAAATCAATACTGTCACCTGCCAGTTGAACTGTTCTGAC
CATGGCCACTGTGATTCATTCACCAAACGCTGTATCTGTGACCCTTTCTGGATGGAGAAT
TTCATCAAGGTGCAGCTGAGGGATGGAGATAGCAACTGTGAGTGGAGTGTGTTATATGTC
ATCATCGCTTCCTTTGTCATCGTTGTTGCCTTGGGAATTCTGTCCTGGACTGTGATCTGT
TGTTGTAAGAGGCAAAAAGGAAAACCCAAGAGAAAAAGCAAGTACAAGATCCTGGATGCC
ACGGATCAGGAAAGCCTAGAATTGAAGCCAACCTCCCGAGCAGGCATCAAACAGAAGGGC
CCAATGCTGAGCAGCAGCCTGATGCACTCGGAGTCCGAGCTGGACAGTGATGATGCCATC
TTCACGTGGCCAGACCGAGAGAAGGGCAAACTCCTGCATGGTCAGAATGGCTCCGTGCCC
AACGGGCAGACCCCGCTCAAGGCCAGGAGCCCACGGGAGGAGATCTTGTAGTCTCCGGGT
CTGTCTCCTCAGGTTAGGGTCAGCAGTGCCAGTCTGCTTCTCATACCTCCCAAGTCTGAG
GGCAGCTGCTGGTCACTCCACCCTAACACCTCAACCAGAGCTGCTGGTACTTGAATCTAG
AGACATTCTCCAGGCACCCCGGAATGAAGCTGTGAACGAAGAGTTTTCCTCTTTAACCTG
TCTGGTAGGTCCCCCCCAACGTCCTCACCTCAGGGCCACCTTTTTTCCAGCCTCTCCCCT
GCTCCGAGGGCAGATGGTGCCAGCTCCTGGCCTCCTCTCCAGCTCCCTGTTGGCAGGGTT
GCTGCTCCCAGGGCGACTGCACAGTGAGGCCTGGCTGTGTCCTCCACACCTGGGTACAGA
ACGAAGCACCACAGCCGTCTGGCTCCAAAAGCCTGCTTGCGGGCATGGTCTTTGTTCTCT
TCTCGGGATGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BUW6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BUW6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               715-900, - strand, RNAz p=0.86778

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               715-900, - strand, RNAz p=0.86778

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               90-220, gnl|bosTau2|chr3 (77406067-77406198)
               

               
               90-220, gnl|Hg17|chr1 (35577731-35577600)
               

               
               90-220, gnl|Mm7|chr4 (126291779-126291910)
               


               
               393-1032, gnl|bosTau2|chr3 (77413774-77414450)
               

               
               393-1032, gnl|Hg17|chr1 (35569786-35569160)
               

               
               393-1032, gnl|Mm7|chr4 (126297802-126298479)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-220, gnl|bosTau2|chr3 (77406067-77406198)
               

               
               90-220, gnl|Hg17|chr1 (35577731-35577600)
               

               
               90-220, gnl|Mm7|chr4 (126291779-126291910)
               


               
               393-1032, gnl|bosTau2|chr3 (77413774-77414450)
               

               
               393-1032, gnl|Hg17|chr1 (35569786-35569160)
               

               
               393-1032, gnl|Mm7|chr4 (126297802-126298479)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               eje (0.0988338)

	90-220, gnl\|bosTau2\|chr3 (77406067-77406198)
	90-220, gnl\|Hg17\|chr1 (35577731-35577600)
	90-220, gnl\|Mm7\|chr4 (126291779-126291910)

	393-1032, gnl\|bosTau2\|chr3 (77413774-77414450)
	393-1032, gnl\|Hg17\|chr1 (35569786-35569160)
	393-1032, gnl\|Mm7\|chr4 (126297802-126298479)