Non-Coding RNA Search

Ss1.1-Pig3-SRG8008N14.3

Sequence:


               
               AGCTGTGTTCTACCCCCTCTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCT
CTACATCGGGACAGGAGCTGACATGGACGTGTGCCTTACAAACTATGGTCACTGTAACTA
CGTGTCCGGGAAACACGCCTGCATATTCTACGATGAGAATACCAAACATTATGAGCTGTT
AAACTACAGTGAGCACGGGACGACGGTGGACAACGTGCTGTATTCATGTGACTTCTCTGA
GAAGACCCCGCCAACCCCCCCAAGCAGTATTGTTGCCAAAGTGCAGAGTGTCATCAGGCG
CCGCCGGCACCAGAAACAAGACGAAGAGCCAAGTGAGGAGGCAGCCATGATGAGCTCCCA
GGCCCAGGGCCCACAGCGGAGACCCTGCAACTGCAAAGCCAGCAGCTCGAGCTTGATTGG
GGGCAGTGGGGCTGGCTGGGAAGGCACGGCCTTACTGCACCACGGCAGCTACATCAAGCT
GGGGTGCCTGCAGTTTGTCTTCAGCATCACTGAGTTTGCGACCAAACAGCCCAAAGGAGA
TGCCAGCCTGCTGCAGGATGGGGTCTTGGCCGAGAAGCTCTCTCTCAAGCCCCACCAGGG
CCCTGTGCTGCGCTCCAACTCCGTTCCCTAGGACTGGCGGCCACGTCACCTGCCTGTCCA
CCCAACCCAAGACTCCTGCAATGCAAAAATGTACACAAACCAAGCCTGGGTTTTTTCTAT
ACTCCACCAGAAACCCTTCAACTACAATCTTTGCATGAAATGAAGAAAACCTTTTGACTG
TTTTTTAAAAATCCTTTTTCTTTTCTCAAGTTCTAGGGGGCATTTGCACATATATTTGTA
CTCAACATTTCATGGGAAAGCGGCTGACCGAGCTGAGGAACAGCGTGGGCAGGGAGGGGA
AGGCCGATGGTCTGGACACTTCCTCCAACACAGAACCGCTCCCCACCCACCTTCTGCTCC
CTCCCCCTCGCCCGCCGTTGTAAAATAATCAGAAACTTGTTCTATTTTGTGGCAGTGACA
ATAGTTTTATATTAAAAGAAAAAAATACAGTTTTCATACAGCAAAATCTATACAATATCA
TTGTTTTATTTAATAAAGATCGCTACCCACCCTCCTCCTATGGTTCCCACCCTCCGGGTT
CTTTTCCCTTTCTGCAGCAGTTGCACTACAGGTAGCTACTGTGTATTATGGACAAATGAG
AAATGAATTCTTTTTCTGGCTGTCCATCTATTTTATTTCAAATAAGGAAAAGTGTATTTG
GATTTTGTGTAAATACATCTAGTGATGACATTTTTTCAATGTTTTTAAAAACTGTGTACA
GTACTACATGTGGTAGAGCGTTTTCTTCAAATTGTCTATTGTAGCAAAAACGTTTTTGTC
GTAAACCTGTTTTGTCTCCTTTTTTTGTTCTCTTGCCACTTCTCTCCTGCTCCTCCCATC
CCTGGCTCCCTCCTCTCCTCCCTCCCCCCACAACTAGTACTGATGTACATAGTAATTGTA
ATGTTTTAGACTTTACAGAAACTTTCCTGTATTCTGTATATAAAAAAACAAAAATACTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGTGTTCTACCCCCTCTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCT
CTACATCGGGACAGGAGCTGACATGGACGTGTGCCTTACAAACTATGGTCACTGTAACTA
CGTGTCCGGGAAACACGCCTGCATATTCTACGATGAGAATACCAAACATTATGAGCTGTT
AAACTACAGTGAGCACGGGACGACGGTGGACAACGTGCTGTATTCATGTGACTTCTCTGA
GAAGACCCCGCCAACCCCCCCAAGCAGTATTGTTGCCAAAGTGCAGAGTGTCATCAGGCG
CCGCCGGCACCAGAAACAAGACGAAGAGCCAAGTGAGGAGGCAGCCATGATGAGCTCCCA
GGCCCAGGGCCCACAGCGGAGACCCTGCAACTGCAAAGCCAGCAGCTCGAGCTTGATTGG
GGGCAGTGGGGCTGGCTGGGAAGGCACGGCCTTACTGCACCACGGCAGCTACATCAAGCT
GGGGTGCCTGCAGTTTGTCTTCAGCATCACTGAGTTTGCGACCAAACAGCCCAAAGGAGA
TGCCAGCCTGCTGCAGGATGGGGTCTTGGCCGAGAAGCTCTCTCTCAAGCCCCACCAGGG
CCCTGTGCTGCGCTCCAACTCCGTTCCCTAGGACTGGCGGCCACGTCACCTGCCTGTCCA
CCCAACCCAAGACTCCTGCAATGCAAAAATGTACACAAACCAAGCCTGGGTTTTTTCTAT
ACTCCACCAGAAACCCTTCAACTACAATCTTTGCATGAAATGAAGAAAACCTTTTGACTG
TTTTTTAAAAATCCTTTTTCTTTTCTCAAGTTCTAGGGGGCATTTGCACATATATTTGTA
CTCAACATTTCATGGGAAAGCGGCTGACCGAGCTGAGGAACAGCGTGGGCAGGGAGGGGA
AGGCCGATGGTCTGGACACTTCCTCCAACACAGAACCGCTCCCCACCCACCTTCTGCTCC
CTCCCCCTCGCCCGCCGTTGTAAAATAATCAGAAACTTGTTCTATTTTGTGGCAGTGACA
ATAGTTTTATATTAAAAGAAAAAAATACAGTTTTCATACAGCAAAATCTATACAATATCA
TTGTTTTATTTAATAAAGATCGCTACCCACCCTCCTCCTATGGTTCCCACCCTCCGGGTT
CTTTTCCCTTTCTGCAGCAGTTGCACTACAGGTAGCTACTGTGTATTATGGACAAATGAG
AAATGAATTCTTTTTCTGGCTGTCCATCTATTTTATTTCAAATAAGGAAAAGTGTATTTG
GATTTTGTGTAAATACATCTAGTGATGACATTTTTTCAATGTTTTTAAAAACTGTGTACA
GTACTACATGTGGTAGAGCGTTTTCTTCAAATTGTCTATTGTAGCAAAAACGTTTTTGTC
GTAAACCTGTTTTGTCTCCTTTTTTTGTTCTCTTGCCACTTCTCTCCTGCTCCTCCCATC
CCTGGCTCCCTCCTCTCCTCCCTCCCCCCACAACTAGTACTGATGTACATAGTAATTGTA
ATGTTTTAGACTTTACAGAAACTTTCCTGTATTCTGTATATAAAAAAACAAAAATACTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BJL0_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BJL0_RAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               376-535, - strand, RNAz p=0.978613
               

               
               851-965, - strand, RNAz p=0.940501

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-535, - strand, RNAz p=0.978613
               

               
               851-965, - strand, RNAz p=0.940501

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               297-1560, gnl|bosTau2|chr19 (13821119-13819854)
               

               
               297-1560, gnl|Hg17|chr17 (24257661-24256397)
               

               
               297-1560, gnl|Mm7|chr11 (78110892-78112108)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               297-1560, gnl|bosTau2|chr19 (13821119-13819854)
               

               
               297-1560, gnl|Hg17|chr17 (24257661-24256397)
               

               
               297-1560, gnl|Mm7|chr11 (78110892-78112108)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fbs (0.526039)
               

               
               pro (0.512033)
               

               
               ute (0.265569)
               

               
               pgl (0.236967)
               

               
               fty (0.17584)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               pro (0.512033)
               

               
               ute (0.265569)
               

               
               pgl (0.236967)
               

               
               fty (0.17584)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	376-535, - strand, RNAz p=0.978613
	851-965, - strand, RNAz p=0.940501

	297-1560, gnl\|bosTau2\|chr19 (13821119-13819854)
	297-1560, gnl\|Hg17\|chr17 (24257661-24256397)
	297-1560, gnl\|Mm7\|chr11 (78110892-78112108)

	fbs (0.526039)
	pro (0.512033)
	ute (0.265569)
	pgl (0.236967)
	fty (0.17584)
	che (0.136314)
	ret (0.128733)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)